Letters in Organic Chemistry - Online First
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1 - 20 of 25 results
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One-Pot Synthesis of New Highly Functionalized Pyridine-Fused Pyrazolo[1,2-b]phthalazine Derivatives
Available online: 17 September 2025More LessPyrazole and phthalazine moieties receive special attention in the pharmaceutical and medical industries as essential ingredients in certain drugs. It is known that these substances exhibit a wide range of biological functions. A new method has been developed for the synthesis of pyridine-fused pyrazolo[1,2-b]phthalazine derivatives via a three-component reaction of phthalhydrazide, aromatic aldehydes, and 2-aminopropene-1,1,3-tricarbonitrile. This transformation presumably occurs via Knoevenagel condensation, Michael addition, cyclization and isomerization sequence of reactions. Noteworthy features of this protocol include easy isolation, a broad substrate range, non-column chromatographic separation and high product yields. Benzaldehydes containing electron-withdrawing groups, such as Br, Cl, F, CN and NO2, were found to be very reactive in the process and to provide good yields of the appropriate pyridine-fused pyrazolo[1,2-b]phthalazine derivatives. In addition, the electron-donating groups such as hydroxyl, methoxy, ethoxy and isopropyl were also favourable for the transformation. In conclusion, the current study describes a straightforward new one-pot, three-component method for the synthesis of pyridine-fused pyrazolo[1,2-b]phthalazine derivatives. The transformation requires the use of an inexpensive and readily available catalyst and does not require column chromatographic purification for isolation of products. The devised protocol's primary advantages are its straightforward experimental process, wide range of substrates, and high yields.
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Novel and Improved Method for the Synthesis of Bis-Benzimidazole, Bis-Benzoxazole, and Bis-Benzothiazole Derivatives
By Jebbari SaidAvailable online: 01 September 2025More LessEleven novel derivatives belonging to the benzimidazole, benzoxazole, and benzothiazole families were successfully synthesized through a condensation reaction involving o-phenylenediamine, o-aminothiophenol, and o-aminophenol, respectively. These reactions were carried out in the presence of cyclohexanediaminetetraacetic acid (CDTA) under acidic conditions, which acted as a catalyst to promote the cyclization process. The synthetic procedures employed represent innovative methodologies for the preparation of bis-benzimidazole, bis-benzoxazole, and bis-benzothiazole derivatives, offering isolated yields ranging from 50% to 70%, depending on the specific substrate and reaction conditions. The structural identity and chemical composition of the synthesized compounds were rigorously confirmed by a combination of advanced spectroscopic techniques. These included Nuclear Magnetic Resonance (NMR) spectroscopy, providing detailed information about the hydrogen and carbon environments within the molecules, Fourier-Transform Infrared (FTIR) spectroscopy, allowing for the identification of characteristic functional groups, and High-Resolution Mass Spectrometry (HRMS), offering precise molecular weight determination and providing structural insights. Furthermore, a plausible interaction mechanism underlying the formation of these heterocyclic compounds was proposed, contributing to a better understanding of the reactivity and synthetic pathway involved. This study highlights the potential of CDTA as an effective mediator in heterocyclic synthesis, laying the groundwork for the future development of related compounds with potential applications in medicinal or materials chemistry.
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Copper Ferrite Nanoparticles: An Efficient Catalyst for the One-Pot Four-Component Synthesis of Pyrano[2, 3-c] Pyrazole Derivatives
Authors: Amruta K. Mhaske, Anil G. Gadhave, Sachin V. Patil and Bhagwat K. UphadeAvailable online: 01 September 2025More LessAn efficient CuFe2O4 nanocatalyst was created using the simple and cost-effective assisted sol gel method, which has been effectively worked with as an efficient catalyst for one-pot multicomponent synthesis of pyrano[2,3-c] pyrazoles starting from aromatic aldehydes, malononitrile, ethyl acetoacetate, and hydrazine hydrate. The synthesized catalyst was characterized by using Fourier transform infrared (FT-IR), X-ray diffraction (XRD), energy dispersive X-ray (EDX), scanning electron microscopy (SEM), and transmission electron microscope (TEM) techniques. The synthesized organic compounds were examined using IR, 1H NMR, and 13C NMR spectroscopy. The yield of pyrano[2,3-c] pyrazoles was studied using various reaction parameters such as the amount of catalyst, type of solvent, reaction conditions, and time. The present work's significant advantages such as simple setup, mild reaction conditions, non-toxic solvents, high yields, simple purification, efficiency, and utilization of recovered materials after four cycles.
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Efficient and Expeditious One-Pot Multicomponent Synthesis of Pyranopyrazole Derivatives Using Glutamic Acid as a Catalyst
Available online: 27 August 2025More LessPyranopyrazole derivatives are important heterocyclic scaffolds known for diverse pharmacological and industrial applications. However, conventional methods for their synthesis often require toxic reagents, harsh reaction conditions, and extended reaction times, creating environmental and operational concerns. Developing green, efficient, and sustainable synthetic methodologies for these derivatives remains a significant need in heterocyclic and medicinal chemistry. We developed an efficient, one-pot multicomponent reaction (MCR) protocol for synthesizing pyranopyrazole derivatives using glutamic acid as a biodegradable, non-toxic, and recyclable catalyst under solvent-free conditions at room temperature. The reaction involves the condensation of ethyl acetoacetate, aromatic or heteroaromatic aldehydes, hydrazine hydrate, and malononitrile, enabling rapid and high-yield synthesis. The methodology provided the desired pyranopyrazole derivatives in excellent yields (91–94%) within short reaction times. We systematically evaluated the effects of catalyst loading, solvent variation, and catalyst recyclability, demonstrating that glutamic acid can be reused for at least five cycles with minimal loss in activity. All synthesized compounds were characterized using NMR and FTIR spectroscopy, confirming the successful formation of target structures. A plausible reaction mechanism was proposed based on literature precedents and experimental observations. This green and efficient protocol offers operational simplicity, high atom economy, a straightforward workup, and an environmentally friendly profile, aligning with green chemistry principles. The methodology provides a practical and sustainable approach for the rapid synthesis of pyranopyrazole derivatives, expanding synthetic strategies for heterocyclic compounds with potential medicinal and material applications.
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Microwave-Assisted Synthesis of Imidazo[1,2-a]Pyridine Derivatives by Three-Component Reaction of Phenyl Glyoxals, 2-Aminopyridines, and Barbituric Acids
Authors: Nguyen Thi Chung, Vo Cong Dung and Dau Xuan DucAvailable online: 27 August 2025More LessA straightforward and facile method for the synthesis of imidazo[1,2-a]pyridine derivatives by one-pot, three-component reaction of phenyl glyoxals, 2-aminopyridines, and barbituric acids has been developed. The synthesis was performed in a microwave reactor and under solvent-free conditions without using any catalyst. The synthesis displayed many other attractive features such as high efficiency, short reaction time, simple product purification, and environmentally benign reaction conditions. Moreover, the synthesis could be applied on a gram scale without any significant decrease in reaction yield. Eleven imidazo[1,2-a]pyridine adducts were provided in high yields (82-96%), and their structures were confirmed by NMR data. A comparison between this method and the literature report was also included. A plausible reaction mechanism involving a Knoevenagel condensation and aza-Michael addition was also suggested.
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Eco-Friendly Microwave-Assisted Synthesis of Fused Pyrimido[4,5-d]Pyrimidine Derivatives via a Catalyst-Free Hantzsch Multicomponent Reaction
Available online: 18 August 2025More LessSustainable green heterocyclic compounds featuring fused bi-, tri-, and tetracyclic systems containing pyrimidine-barbituric acid rings were synthesized via the Hantzsch reaction using a simple and efficient method. The one-pot, three-component reaction involved bis-aldehydes, barbituric acid, and substituted amines, and was carried out under microwave irradiation without the use of a catalyst. The reactions proceeded smoothly, affording the desired products in high yields with straightforward workups. This study emphasizes the importance of green chemistry principles in the synthesis of fused pyrimido[4,5-d]pyrimidine systems, highlighting advantages, such as environmental friendliness, operational simplicity, efficiency, and safety.
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Efficient One-Pot Synthesis of 4-(((8-Hydroxyquinolin-7-yl) (phenyl)methyl)amino)-1,5-dimethyl-2-phenyl-1,2-dihydro-3H-pyrazol-3-one Derivatives Using TiO2 Nanoparticles as a Catalyst
Authors: Dharmesh Katariya, Chandani Gori, Pankaj Solanki, Bharat Kataria and Ranjan KhuntAvailable online: 07 August 2025More LessA series of 4-(((8-hydroxyquinolin-7-yl)(phenyl)methyl)amino)-1,5-dimethyl-2-phenyl-1,2-dihydro-3H-pyrazol-3-one derivatives (4a–j) were synthesized via a one-pot, three-component reaction. The reaction employed benzaldehyde derivatives (1a–j), 4-aminoantipyrine (2), and 8-hydroxyquinoline (3), using titanium dioxide nanoparticles (TiO2 NPs) as a catalyst. The TiO2 NPs, synthesized through a sol–gel method, efficiently catalyzed the transformation under mild conditions, delivering high yields in just 9 minutes at room temperature. Optimization revealed that 0.010 g of catalyst in methanol was optimal, with protic solvents outperforming aprotic and non-polar ones. The reaction progress was monitored using thin-layer chromatography (TLC), and the final products were isolated via recrystallization. A systematic study of reaction parameters confirmed TiO2 NPs as an efficient, reusable, and environmentally friendly catalyst for multicomponent organic synthesis.
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Naphthol-based Optical Chemosensor for the Detection of Lead Ions in Water
Authors: Yashika Bhatia, Jyoti Gaba and Vivek SharmaAvailable online: 04 August 2025More LessLead ions are among the most harmful and widely studied toxins responsible for a wide range of health and environmental risks. The objective of this study was to synthesize a naphthol based optical chemosensor for the detection of lead ions. A naphthol based organic probe 1-(acetylamino(2-chlorophenyl)methyl)-2-naphthol (NCC) has been synthesized by the condensation reaction of -naphthol with o-chlorobenzaldehyde in the presence of chlorosulfonic acid and characterized using various spectroscopic techniques. The probe NCC was subjected to evaluate its potential for the recognition of different mono, di, and trivalent cations in the acetonitrilic medium using UV-Visible spectroscopy. The chemosensing behaviour of NCC was analyzed under various pH, temperature, and time and also in the presence of interfering ions. The results showed an increment in the λmax at 230 nm with a small blue shift of 2 nm after the addition of Pb2+ ions to the solution of NCC. Under the optimum conditions, the detection limit and association constant of NCC for Pb2+ ions were calculated to be 28.0 ppm and 8.1103 M-1 using titration studies. The addition of Na2EDTA quenches the absorption intensity of the NCC-Pb2+ complex, indicating that NCC serves as a reversible chemosensor for Pb2+ ions. The changes in the UV-visible spectrum of NCC in the presence of Pb2+ ions suggests the interaction of NCC with Pb2+ ions and the formation of a complex, which was found stable for a long period of time in the tested temperature range (5-45 °C). The skeleton reported in this work showed excellent suitability for the detection and determination of Pb2+ with minimal interference from other common cations and anions.
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Visible Light-induced Autocatalytic Aza-6π Electrocyclization to Access Polysubstituted Phenanthridines
Authors: Tian-Shun Duan, Yu-Qin Zhang, Mei-Fang Qi and Fang-Lin ZhangAvailable online: 04 August 2025More LessAutocatalytic reaction represents an appealing approach in organic chemistry and life sciences. The development of a novel autocatalytic mode for aza-6π electrocyclization reactions represents a promising protocol for the efficient construction of aromatic N-heterocycles. Drawing inspiration from natural biosynthetic pathways for aromatic heterocycles, a wide variety of bioactive natural products can be synthesized efficiently using a biomimetic aza-6π electrocyclization strategy. However, conventional thermal catalysis inevitably suffers from a limited substrate scope and diversity. The photochemical protocol is considered a promising approach in elegant organic synthesis, but the application of photocatalysis in 6π electrocyclization has been rarely explored. In this context, we hypothesized that the aza-hexatriene system of phenanthridine precursor might cyclize with the intermediate imine, which could be formed in situ from the reaction of 2-arylaniline and aldehyde source, respectively. Subsequently, the aza-hexatriene is excited by the corresponding phenanthridine via energy transfer under visible light. The final intramolecular cyclization could generate the substituted phenanthridines. Herein, a novel visible light-induced autocatalytic aza-6π electrocyclization method was reported for the synthesis of diverse phenanthridines. A broad spectrum of 2-arylaniline and (hetero)aryl aldehydes could be well tolerated under metal- and oxidant-free conditions, affording the corresponding phenanthridines in moderate to good yields. This newly developed method represents a highly efficient and cost-effective synthetic protocol. The late-stage functionalization of celecoxib and bromopride derivatives also demonstrated the practical value of this method.
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Next-Generation Plant Constituents Delivery by Harnessing Liquisolid Technology for Optimal Pharmaceutical Outcomes: A Review
Authors: Sakshi Sharma, Devika Tripathi and Awani Kumar RaiAvailable online: 29 July 2025More LessThe effectiveness of herbal preparations depends on achieving therapeutic plasma concentrations. The in vivo efficacy of phytoconstituents is often hindered by poor lipid solubility, high molecular weight, or degradation in the gastric environment. The liquisolid system is a promising technique for developing herbal pharmaceuticals due to its simple manufacturing process, low production costs, industrial viability, excellent flow and compaction properties, and ability to protect active ingredients from oxidation. The liquisolid technique converts liquid formulations, suspensions, or solutions into dry, free-flowing, and compressible powder blends. This approach enhances drug dissolution rates, maintains the photostability of phytoconstituents, and protects against humidity, thereby extending shelf-life. However, the technique faces challenges, such as carefully selecting excipients and difficulties with high-dose formulations. Overcoming these challenges is crucial to improving the therapeutic efficacy of phytoconstituents in pharmaceutical applications. This review explores the liquisolid technique for phytoconstituent drug delivery by conducting an extensive literature analysis using PubMed, CrossRef, and Google Scholar databases. Advances in excipient selection and formulation strategies can significantly enhance the therapeutic potential of herbal treatments employing liquisolid technology, fostering the development of advanced drug delivery systems in modern pharmaceuticals.
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Green Synthesis of Gold Nanomaterials: Recent Studies and Scopes
Authors: Sudipto Debnath, Deepak Kumar, Susmita Mondal, Smarto Basak, Amit Kumar Dixit, Ranjit Kumar Dey and Manosi DasAvailable online: 29 July 2025More LessA growing number of applications in the fields of biotechnology, biomedicine, catalysis, and energy storage have resulted from the development of gold nanoparticles (AuNPs), which have garnered considerable attention in recent years due to their unique biochemical, optical, electronic, and catalytic properties. However, the traditional approaches to creating AuNPs, like chemical reduction and physical procedures, frequently call for the use of toxic solvents, dangerous compounds, and large energy inputs, raising questions about environmental sustainability and public health. In recent years, there has been a growing interest in the development of environmentally friendly and sustainable approaches to synthesize AuNPs, often referred to as “green synthesis” or “biogenic synthesis”. Green synthesis of AuNPs involves the use of biocompatible agents, such as plants, microorganisms, and biomolecules, to reduce gold ions and form AuNPs in a single step. Compared to conventional approaches, this strategy has a number of benefits, such as a reduced adverse effect on the environment, cheaper production costs, and better scalability. In this review, we will provide an overview of the current state of green synthesis of AuNPs, highlighting the various biogenic agents and characterization methods that have been employed to date. Furthermore, we shed light on the role of plant-derived biomolecules in the reduction mechanism and stabilization processes. Our review provides researchers with a standard reference for future studies.
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Synthesis and In-Vitro Antioxidant Activity of Novel Trihydroxychromen: Apigenin Derivatives
Authors: Ritika Sahu, Surendra Jain and Deepti JainAvailable online: 25 July 2025More LessAntioxidants are vital molecules that play a crucial role in maintaining optimal health by neutralizing reactive oxygen species (ROS) and mitigating oxidative stress, which is implicated in various chronic diseases, such as cancer and heart diseases. Apigenin, a naturally occurring flavonoid, has demonstrated significant antioxidant properties through free radical scavenging, metal ion chelation, and modulation of redox signaling pathways. We synthesized a series of novel apigenin derivatives via the Mannich reaction and evaluated their antioxidant activities using the 2,2-diphenyl-1-picrylhydrazyl (DPPH) assay. New derivatives of trihydroxychromen were synthesized and evaluated for their in vitro antioxidant activity. The target compounds were prepared by bonding pharmacophoric moieties possessing antioxidant activity, including amino substituents, via simple and efficient synthetic strategies. Physical and spectral data confirmed the structures of the newly synthesized compounds. The synthesized compounds 4e (IC50 = 0.09 µg/ml), 4i (IC50 = 2.74 µg/ml), and 4j (IC50 = 2.90 µg/ml) showed potential antioxidant activity than gallic acid (IC50 = 4.39 µg/ml) and exhibited moderate to excellent activities, with some derivatives surpassing the standard gallic acid. Molecular docking studies further elucidated the presence of an amino substituent at position 8 in compounds 4i, 4j, and 4e, resulting in good interactions with the receptor molecule's TYR662, ASN710, and GLN553. This study highlights the potential of apigenin derivatives as effective antioxidants with possible therapeutic applications.
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Designing of Pyrazole Derivatives Using 3D-QSAR, ADMET, Molecular Docking and MD Simulations for Enhanced Antibacterial Properties
Available online: 18 July 2025More LessThe study aims to work on Computational Studies to Optimize Pyrazole Derivatives for Antibacterial Activity. A dataset of 28 Pyrazole derivatives having antibacterial activities was used to generate a pharmacophore hypothesis and a 3D-QSAR model. The established pharmacophore model (DHRRR_1) features three hydrogen bond donors (D), hydrophobic (H), and aromatic ring (R) features, exhibiting favorable parameters (R2 = 0.9031; Q2 = 0.9004). Hypothesis validation, enrichment analysis, and contour plot analysis were conducted, followed by virtual screening of the ChEMBL database using the optimized pharmacophore model and filtering based on the Lipinski rule of five. Docking was done with PDB ID 3G75 targeting DNA gyrase using Schrodinger software, further Desmond module of Schrodinger 2024-2 was used for MD simulations. The QSAR model was validated along with standard parameters. A library of NCE’s was designed with hypothesis DHRRR_1. Compounds that showed no violations in ADMET studies were further analysed for their interactions in the docking study. Eight compounds have shown zero violations in ADMET and have shown greater binding affinity in comparison to the standard Metronidazole. Further in the MD simulation results, instability of the complex 3G75-Comp D1 was analysed for 100 ns. This study provides a comprehensive approach for identifying novel Pyrazole-based antibacterial agents, highlighting compound D1 as a promising lead. Most promising compound D1 has indicated the role of the Hydroxy group, Pyrazole, and pyrrole ring for good antibacterial activity.
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A Comparative Study of the Chemical Profile from Species of the Bacillus cereus Group
Authors: Bruno Salazar, Jessica Vaca, Aurelio Ortiz and Estibaliz SansineneaAvailable online: 16 July 2025More LessThe Bacillus cereus group includes eight well-characterized and established species, whose classification and identification have been arduous and intense tasks. The similarity between Bacillus cereus group species and the discovery of new strains have complicated their classification and identification. The chemical profile can be complementary, along with molecular methodologies, to classify Bacillus species. With this issue in mind, we performed a comparative study on natural compounds isolated from Bacillus cereus, Bacillus mycoides, Bacillus thuringiensis, Bacillus weihenstephanensis and Bacillus toyonensis. We isolated compounds from Bacillus cereus, Bacillus mycoides, Bacillus thuringiensis, Bacillus weihenstephanensis and Bacillus toyonensis, elucidating their chemical structure by spectroscopic methods. The data suggests that indolic compounds are isolated from B. thuringiensis, preferentially serving to identify this species. Moreover, macrolactin compounds are extremely specific for B. weihenstephanensis since these compounds are not isolated from any other species. Therefore, the chemical profile of each species can be related to a species of this group, helping to define the type of species. In addition, the data achieved suggest that although genomically B. mycoides and B. weihenstephanensis can be indistinguishable, both species should be treated differently.
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One-pot Synthesis of Hexahydroquinazolinone using Co-Al2O3-SO3H as an Efficient Catalyst
Authors: Masoumeh Mehrabi, Asadollah Farhadi, Neda Hasanzadeh and Ali Reza KiasatAvailable online: 02 July 2025More LessBy employing a catalytic proportion of Co-Al2O3-SO3H in a three-component Biginelli-type condensation, combining various aromatic aldehydes, 1,3-cyclohexadione, and urea, practical one-pot synthesis of hexahydroquinazolinone was accomplished. This method yielded hexahydroquinazolinones in good yields, which were further enhanced under reflux conditions. This approach offers several significant advantages, including high efficiency, straightforward reaction conditions, simple workup, reusable catalysts, superior yields, and shorter reaction times. The structure of the produced heterogeneous catalyst Co-Al2O3-SO3H was analyzed using Brunauer-Emmett-Teller (BET) analysis, X-ray diffraction (XRD), and Scanning Electron Microscopy (SEM).
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Nickel-Catalyzed Coupling Reaction of Arylboronic Acid with Methyl Dithiocarbamates for the Synthesis of Thioamides
Authors: Jinsong Hou, Lirong Han and Qinghan LiAvailable online: 27 June 2025More LessThis study aimed to carry out highly efficient and simple cross-coupling reactions of arylboronic acid with methyl dithiocarbamates for the synthesis of thioamide derivatives using Ni(acac)2(5 mol%)/TFP(5 mol%) as a catalyst. Under the optimized reaction conditions, the coupling reaction between arylboronic acid with methyl dithiocarbamates was carried out smoothly, and thioamides were obtained with 27-85% isolated yields. Furthermore, dithiocarbamate methyl esters with allyl, cyano, and acid-sensitive ketal functional groups were successfully coupled with phenylboronic acid to produce the desired product, thioamides, with a yield of 27-69%. Aromatic boronic acids with methoxy or formyl groups on the benzene ring were found to be compatible in this reaction system, and the corresponding thioamides were obtained with an isolated yield of 31-43%. A thioamide with 1-(bis(4-fluorophenyl)methyl)piperazine structural units was prepared with a yield of 65%, which has the potential biological activity. However, this reaction system did not achieve satisfactory results for methyl 1H-imidazole-1-carbodithioate. The structures of all the target compounds were confirmed by melting point determination, HMRS, 1H NMR, and 13-CNMR. The broad functional group tolerance and consistent high efficiency at gram-scale synthesis make this protocol a potentially practical approach for producing thioamide derivatives. The method avoids the use of expensive transition metals, such as Pd, Ir, or Rh, and has the advantage of simple operation.
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Synthesis and Phase Transition Behaviors of Laterally Disubstituted Liquid Crystals Containing 2,5-Dimethyl-1,4-phenylenediamines
Authors: Chi-Kien Seou, Sie-Tiong Ha, Yip-Foo Win, Guan-Yeow Yeap and S. Sreehari SastryAvailable online: 20 June 2025More LessA new series of low molar mass mesogens having double lateral substituents were prepared and characterized with the objective to explore the effect of structure modification on the mesomorphic behavior. The molecular structure has three aromatic rings at the centre core system, which is connected by an imine linking group, two flexible alkyloxy chains at both sides of molecules and two lateral methyl groups attached to the core system. This low molar mass mesogen is known as bis(4-alkyloxybenzylidene)-2,5-dimethyl-1,4-phenylenediamine with different numbers of carbon (n) at the alkyloxy chain. Molecular structures were confirmed via infrared and nuclear magnetic resonance spectroscopic and mass spectrometric methods. Phase transition studies were conducted using a differential scanning calorimeter. Whereas, mesophase characterization was determined by polarizing optical microscopy and the temperature was varied with a temperature controller. The current core system of benzylidene-1,4-phenylenediamine showed good potential of exhibiting liquid crystal as all compounds were found to exhibit a nematic phase. Double lateral methyl atoms at the central mesogenic core had broadened the molecular width. This has caused a reduction in the overall lateral intermolecular attraction, and therefore, it exhibited a nematic phase. As the number of carbons at the alkyloxy chain increased, the clearing temperatures were observed to show a descending trend. A comparison of thermal properties was made between the current compounds with analogous compounds that do not possess any lateral substituent or have a single lateral substituent attached to the mesogenic core.
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Simple Practical Preparations of Sufentanil from Cheap and Commercially Available 1-methyl-4-piperidone
Available online: 12 June 2025More LessNovel simple approach was elaborated for the preparation of fentanyl and sufentanil starting from commercially available, cheap 1-methyl-4-piperidone. Compared to existing syntheses new route is shorter, easily scalable, and does not require the use of expensive palladium catalysts, high-pressure equipment, and chromatographic separations. Moreover, it allows for to avoidance of working with the unstable norsufentanil, which is prone to a facile acyl migration to the nitrogen atom of the piperidine core even at ambient temperature, resulting in contamination of the target product.
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In silico Studies of Saponins from Hoya Verticillata var. Verticillate with Important Apoptosis Potency
Authors: Cuong Viet Hoang, Tan Quang Tu, Hung Duc Nguyen and Mau Hoang ChuAvailable online: 04 June 2025More LessSteroidal saponins are natural compounds known to have anticancer activity by inducing apoptosis through inhibition of Bcl-2. This study was carried out on the potency, mechanism, and binding affinity of steroidal saponins present from Hoya verticillata var. verticillata as Bcl-2 inhibitor of colorectal cancer in silico using molecular docking and molecular dynamics simulation. All steroidal saponins exhibited hydrogen bonds in molecular docking, Van der Waals, and hydrophobic interactions. The binding potentials of steroidal saponins collected in previous studies and a reference compound, navitoclax, as target protein 6GL8 of BCL-2 inhibitor of colorectal cancer, were examined using molecular docking. The results showed the binding stabilities as -8.28, -8.87, -9.29, -11.09, -11.16, and -8.34 kcal/mol, respectively. Given the limited in-silico studies on pregnane saponins, we considered the extensive interest in these compounds. So, molecular dynamics studies were carried out to better comprehend the dynamics of ligands within the binding pocket of the target protein. Molecular dynamics simulation revealed that the binding of parasiticoside B to the 6GL8 receptor was stable and strong, based on their RMSD, RMSF, and the number of hydrogen bonds throughout the simulation. From the molecular interaction analysis derived from molecular dynamic trajectories of each ligand-bound complex, these interacting amino acids might be determined to play a crucial role in binding with the ligands of the 6GL8 active site. Parasiticoside B could be a good candidate for new inhibitors of anti-apoptotic BCL-2 proteins in colorectal cancer.
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