Current Biotechnology - Online First
Description text for Online First listing goes here...
-
-
In-silico Lactochassis: In Silico Prediction of Essential Genes in Lacticaseibacillus casei: A Step towards Genome Minimisation
Available online: 24 October 2025More LessIntroductionSynthetic biology using minimal-genome engineering has been proposed as the best way to optimize probiotic chassis. A minimal genome presents a significant advantage of enhanced production of heterologous proteins. This research article presents a comprehensive computational biology study for bacterial gene essentiality and genome reduction design within Lacticaseibacillus casei ATCC 393.
MethodsThis study used a computational biology approach to identify the essential genes of L.casei ATCC 393. Essential genes were identified using DELetion design by Essentiality Analysis Tool (DELEATv0.1), Gene Essentiality Prediction Tool for Complete-Genome Based on Orthology and Phylogeny (Geptop2), the Database of Essential Genes (DEG), and Alignable Tight Genomic Clusters-Clusters of Orthologous Genes (ATGC-COG). The criteria for identification of essential genes included phyletic retention (essential orthologs), codon usage, G + C content, length, hydrophobicity score, and essential genomic elements, such as protein-coding genes and noncoding RNAs, among other factors.
ResultsUsing a consensus approach, 633 putative essential genes were identified. In addition, 145 genes associated with probiotic attributes, such as the production of bacteriocins, bile and acid resistance, immune modulation, and adherence to host gut epithelia, were identified.
DiscussionThe directed evolution by serial passage was initiated by streaking L. casei ATCC 393 as part of the test phase of the Design-Build-Test-Learn (DBTL) cycle. The survival rate data were calculated from mean 0D600 nm readings. The data revealed a significant difference in survival rates between E1 and E2 from day 1 to day 38 (V = 224, p = 0.00745), indicating that factors, possibly inherent to the isolates themselves or subtle variations in the environment, may be influencing the results. Overall, the significant differences suggest that survival rates were affected by specific NaCl concentrations. Lower survival rates were observed at 50 g/L and 71g/L compared to other concentrations.
ConclusionThe in-silico analysis yielded valuable insights into the essential genes of L. casei ATCC 393. Further, it contributes to understanding the fundamental genetic makeup of L. casei ATCC 393 and its potential as a probiotic chassis for various applications, including the development of novel biotherapeutics.
-
-
-
Phthalate Toxicity in Different Experimental Models
Authors: Kajal Gaur and Yasir Hasan SiddiqueAvailable online: 06 October 2025More LessPhthalates (PAEs) are the major source of concern because they are commonly used plasticizers in various plastic products and can make their way into the environment. Mostly, phthalate metabolites are released in the urine. In many research studies, it has been observed that some metabolites of phthalates are more harmful than the parental compounds and can be used as biomarkers for the study of phthalate toxicity. Despite some inconsistencies, the present review describes the exposure of phthalates to children, older people, and aquatic life. The studies carried out on the toxic effects of different types of phthalates on various experimental models have been reviewed. The review also summarises the interaction between mechanisms of action involved in the toxicity induced by various PAEs. The literature search has been carried out using PubMed, Science Direct, Scopus, and Google Scholar databases. The studies available on the toxicity of phthalates from 1982 to 2024 have been considered for the review.
-
-
-
Potential Therapeutic and Health Benefits of Spirulina Microalgae, in Neurodegenerative Disorders: From Nutraceutical to Neuroprotectant
Authors: Seema Sharma, Sampat Singh Tanwar, Sumeet Dwivedi and Sheema KhanAvailable online: 29 September 2025More LessNeurodegenerative diseases such as Alzheimer’s disease (AD) and Parkinson’s disease (PD) are progressive disorders marked by neuronal loss, synaptic dysfunction, and cognitive or motor decline. Oxidative stress and chronic neuroinflammation are key drivers in their pathology. In AD, β-amyloid plaques and tau hyperphosphorylation cause mitochondrial damage and ROS overproduction, while PD involves dopaminergic neuronal loss due to oxidative damage. Elevated cytokines like TNF-α, IL-1β, and IL-6 further worsen neuronal injury. Spirulina (Arthrospira platensis), a nutrient-rich cyanobacterium, is gaining attention as a neuroprotective nutraceutical. Its bioactive compounds-C-phycocyanin, β-carotene, tocopherols, and γ-linolenic acid-exhibit strong antioxidant and anti-inflammatory properties. Preclinical studies show spirulina enhances antioxidant enzymes, lowers lipid peroxidation, and improves cognitive performance. This review analyzed preclinical and clinical studies from PubMed, Scopus, and Web of Science focusing on spirulina’s effects in AD and PD models. Spirulina reduced oxidative markers (MDA, NO), increased antioxidant enzymes (GPx, SOD), downregulated pro-apoptotic genes (caspase-3, Bax), and upregulated anti-apoptotic Bcl-2. It also inhibited NF-κB signalling and reduced inflammatory cytokines. A clinical trial in AD patients reported significant MMSE score improvements with spirulina supplementation. Advanced delivery systems like spirulina-loaded nanoparticles and niosomes enhanced its bioavailability and neuroprotective effects in animal models. Overall, spirulina shows promise in mitigating neurodegeneration by targeting oxidative stress and inflammation. Despite encouraging results, larger clinical trials are needed to confirm its therapeutic potential as a safe, effective nutraceutical for neurodegenerative diseases.
-
-
-
Patent Landscape Analysis of Antioxidants from Lamiaceae Plants: Innovations and Applications
Authors: Reda El Boukhari, Maima Matin, Atanas G. Atanasov and Ahmed FatimiAvailable online: 29 September 2025More LessIntroductionLamiaceae plants are a rich source of natural antioxidants, widely applied in cosmetics, pharmaceuticals, and functional foods due to their therapeutic potential against oxidative stress-related disorders. As natural product innovation accelerates, understanding patent trends can provide strategic insights into technological advances, key stakeholders, and emerging applications.
MethodsA systematic patent landscape analysis was performed using the Espacenet database. The search strategy was based on the intersection of Cooperative Patent Classification (CPC) codes related to therapeutic applications (e.g., A61P39/06 for oxidative stress, A61P17/18 for dermatological use), medicinal preparations (A61K36), and botanical classifications (A01H6/50 for Lamiaceae). All patent documents up to 2024 were included, with no language restrictions. Patent families, publication trends, jurisdictions, assignees, CPC classifications, and technological applications were analyzed to map the innovation landscape.
ResultsBetween 2001 and 2021, there was a steady rise in patent activity related to antioxidants from Lamiaceae species. China led in both the volume and diversity of innovations, followed by the United States and Europe. Technological applications are predominantly concerned with cosmetics, dermatological treatments, pharmaceuticals, and functional food products. Leading assignees included multinational and regional companies, indicating strong commercial interest in these bioactive compounds.
DiscussionThe patent trends reveal increasing global interest in sustainable, plant-derived antioxidant solutions. The strong presence of industry players highlights the translational potential of Lamiaceae-derived compounds in high-value sectors such as anti-aging, anti-inflammatory therapeutics, and wellness. Jurisdictional variations reflect strategic patenting behavior and regional innovation capacities.
ConclusionThis study highlights the growing strategic importance of Lamiaceae-derived antioxidants in innovation ecosystems. The patent landscape identifies key technologies, markets, and actors driving development in natural antioxidant applications. These findings support future interdisciplinary research and industry partnerships aimed at advancing sustainable, bioactive product innovation.
-
-
-
MicroRNA miR-155 and miR-21 as Biomarkers in Active Pulmonary Tuberculosis and the Healing Process: A Mini Review
Available online: 15 September 2025More LessPulmonary tuberculosis (TB) caused by Mycobacterium tuberculosis is still a great challenge in the public health domain to this day. Sputum collection from TB patients followed by an examination of acid-fast bacilli (AFB) is a common diagnostic tool routinely done; however, it could lead to false negative results when the patient excretes saliva instead of sputum. Meanwhile, bacterial culture, which is the gold standard, is time- and labor-consuming. MicroRNAs (miRNAs) are a type of RNA that is small (18-25 nucleotides) and controls the function of messenger RNA (mRNA). MicroRNA is the 6th and most recent cell communication pathway discovered, as the secreted miRNAs are encased in exosomes and can circulate throughout the body and can be found in any body fluids including sputum. MiRNAs in TB patients associated with TB infection can be expressed as increased or decreased according to the severity of the infection. MiRNA-155 and 21 are miRNAs with increased expression in active pulmonary TB and decrease in the healing process, so both miRNAs hold the potency to be used as biomarkers to monitor the level of disease activity and the healing process.
-
-
-
Bio-fabrication of Gold Nanoparticles by Root Extract of Asparagus racemosus and their Potential Biomedical Applications
Available online: 25 August 2025More LessIntroductionThe biosynthesis of gold nanoparticles (AuNPs) is a rapidly developing field that integrates biological systems with nanotechnology to produce nanoparticles with unique properties. This study aimed to biosynthesize gold nanoparticles using Asparagus Racemosus root extract (popularly known as Shatavari root aqueous extract) (AR-AuNPs), to characterize the AuNPs spectrally, and to explore their potential applications.
MethodsAuNPs were synthesized using Shatavari extract, leveraging its polyphenolic content for the reduction of gold ions. The formation of nanoparticles was confirmed using UV-Vis spectroscopy, with a surface plasmon resonance peak at 550 nm. Further characterization was performed using electron microscopy to assess size and morphology, X-Ray Diffraction (XRD) to analyse the crystalline structure, Fourier-Transform Infrared Spectroscopy (FTIR) to identify functional groups, and Dynamic Light Scattering (DLS) to determine particle size and zeta potential.
ResultsThe bio-synthesized gold nanoparticles are spectrally characterized; the size of the gold nanoparticles is below 50 nm, and they reveal very good biomedical applications. The biosynthesized AR-AuNPs exhibited strong antioxidant activity, with the nitric oxide (NO) scavenging method proving superior to the DPPH and H2O2 assays. While the antimicrobial activity of AR-AuNPs was limited against both Gram-positive and Gram-negative bacteria, they showed effective DNA binding activity.
DiscussionThe synthesized gold nanoparticles exhibited a characteristic UV-Vis absorption peak at 550 nm, confirming their successful formation. Dynamic Light Scattering (DLS) analysis revealed an average particle size of 44.7 nm, and the zeta potential was measured at -14.3 mV, indicating moderate stability. The polyphenols present in the aqueous extract of Shatavari plant roots likely played a role in both the reduction and stabilization of the AuNPs. When tested on A549 cell lines, the AR-AuNPs demonstrated significant antiproliferative activity, with an IC50 value of 68.99 µM, compared to Cisplatin. However, they lacked anticancer activity against MCF-7 cell lines. The biosynthesized AR-AuNPs exhibited strong antioxidant activity, moderate antimicrobial activity, and effective DNA binding activity.
ConclusionBiosynthesizing AuNPs using Shatavari extract is a green, sustainable method that produces nanoparticles with desirable properties for various applications. The synthesized AuNPs exhibit promising capabilities in the fields of medicine and environmental science, positioning them as valuable tools for future research. Further studies are needed to explore their potential in real-world applications.
-
-
-
High-Throughput Screening of Novel Indole Alkaloids as Potential Tyrosine Kinase Inhibitors for Breast Cancer Therapy
Available online: 25 August 2025More LessIntroductionBiotechnology provides the biological data and molecular insights that drive Computer-Aided Drug Designing (CADD), which is an advanced computational technique used in drug discovery and development. It integrates biological, chemical, and computational tools to identify and optimize potential therapeutic compounds. Its connection with biotechnology is significant. The importance of the indole moiety in drug discovery emphasizes its privileged status in finding new drug molecules. Understanding the functions of indole alkaloids, as well as structure-activity relationships (SARs) of indole derivatives and receptor tyrosine kinases, such as the platelet-derived growth factor receptor (PDGFR), is critical for developing targeted therapies for various diseases like breast cancer. Rational drug design is found to be important in the drug development process. The aim of the current investigation is to find, explore, and optimize indole alkaloids against receptor tyrosine kinases as a promising avenue in drug discovery and development, particularly in the context of breast cancer treatment employing a computational approach.
MethodsChemAxon Marvin Sketch 5.11.5 was used to create 2D structures of indole alkaloids. The physicochemical characteristics of indole alkaloids, as well as their toxicity, were predicted using Swiss ADME & pkCSM online web tools. Molecular docking technology was used to examine the ligand-receptor interactions of indole alkaloids with the target receptor (PDB: 5GRN) using various programs, including Autodock 1.1.2, MGL Tools 1.5.6, Discovery Studio Visualizer v20.1.0.19295, Procheck, Protparam tool, and PyMOL.
ResultsAll indole alkaloids and their derivatives were determined to be orally bioavailable, less toxic, and have acceptable pharmacokinetic properties according to in silico studies. In comparison to the traditional medication Sunitinib, all indole alkaloids displayed higher docking scores.
DiscussionThe indole alkaloids increase their potential as a novel therapy alternative for breast cancer and could facilitate more comprehensive in vivo, in vitro, chemical-based and pharma studies by medicinal chemists. As of now, our work is limited to in silico investigation of indole analogues, which will lay down a strong foundation for medicinal chemists to explore indole alkaloids.
ConclusionThe increase in binding energy and the quantity of H-bonds created by indole alkaloids with interactions at distances below 3.40A0 provide a helpful starting point for isolating indole alkaloids that are most suitable for additional research. The application of indole alkaloids as a potential new cancer treatment candidate is supported by their pharmacokinetics and toxicological profile, which may aid medical chemists in conducting more in-depth in vitro and in vivo chemical and pharmacological studies.
-
-
-
Antibody-Dependent Enhancement in Flavivirus Pathogenesis: Implications for Immunity, Treatment, and Vaccine Development
Authors: Earon Zheng Jian Lee, Yih Yih Kok and Chiew Yen WongAvailable online: 11 July 2025More LessThe flavivirus family belongs to antigenically closely related viruses that have been a public health concern across the globe. It is well observed that infection by specific flavivirus serotypes can confer lifelong immunity. However, there is an alarming situation of cross-reactivity between antibodies of other flaviviruses or other serotypes without cross-protection. Cross-reaction without cross-neutralising from heterologous flavivirus infection leads to antibody-dependent enhancement (ADE) of disease severity. Antibody-dependent enhancement occurs when sub-neutralising or non-neutralising antibodies generated during a primary flavivirus infection or after vaccination facilitate enhanced viral entry and replication in the host cells. The underlying mechanisms of ADE involve interactions between the antigen-antibody complexes towards the Fc receptors and the complement system. This review provides an overview of the current knowledge on ADE in flavivirus pathogenesis, emphasising the importance of understanding its implications for immune responses, therapeutics and vaccine development.
-
-
-
Phenomorphological Characterization and Genetic Diversity Assessment of Grain and Vegetable Soybean (Glycine max. (L.) Merrill) Lines for Breeding Advancements
Authors: M. Saha, M. Chavan, T. Onkarappa, R.L. Ravikumar and U. DasAvailable online: 10 June 2025More LessIntroductionVegetable soybean is emerging as a valuable crop due to its nutritional and economic benefits. However, its genetic and phenotypic diversity remains less explored compared to grain-type soybeans. This study aimed to evaluate the breeding potential of vegetable soybeans through a comparative analysis of grain- and vegetable-type genotypes.
MethodsTen soybean genotypes (six vegetable-type and four grain-type) were characterized using phenotypic, reproductive, and genetic trait evaluations. Observations included growth stages, pod traits, and yield-related characteristics. Statistical analyses such as ANOVA, GCV, heritability estimates, Principal Component Analysis (PCA), hierarchical and Tocher’s clustering, and Simple Sequence Repeat (SSR) marker analysis were conducted to assess trait variability and genetic diversity.
ResultsSignificant genotype-specific variation was observed. EC892880 matured fastest (R1-R7 in 37-57 days), while RKS-18 took 112 days. EC892882 exhibited the longest pod length (5.63 cm), and EC892880 had the highest number of pods per cluster (6.93). High genetic control was noted for days to 50% flowering (GCV: 27.42%, heritability: 99.89%) and test weight (GCV: 25.38%, heritability: 99.74%). PCA revealed that days to pod setting and maturity (R7) were the primary contributors to phenotypic variation, with PC1 and PC2 accounting for 84.5% of the total variance. Tocher’s analysis showed the highest genetic divergence (D2 = 28,292.49) between Clusters II and III. Among 45 SSR markers, 41 were amplified but showed no polymorphism.
DiscussionThe results highlight substantial phenotypic diversity among genotypes, especially in maturity duration and yield-related traits, with some traits under strong genetic control. However, the lack of SSR polymorphism suggests limited molecular diversity, indicating the need for more robust genomic tools. Vegetable-type soybeans showed high intra-group similarity, which may limit genetic gain unless broader diversity is introduced.
ConclusionThis study identifies key traits and diverse genotypes suitable for targeted breeding in vegetable soybeans. The findings emphasize the potential of phenotypic selection and highlight the urgent need for enhanced genomic marker development to facilitate molecular breeding efforts in vegetable soybean improvement.
-
-
-
Total Phenolic and Flavonoid Contents and Antioxidant Activity of Dactylorhiza hatagirea (D. Don) Soo
Authors: Megha Sharma, Kumud Saklani, Gulshan K. Dhingra, Sumit Purohit and Subhash ChandraAvailable online: 08 May 2025More LessObjectivesPlant secondary metabolites include chemical compounds like flavonoids and phenolic acids. The use of these ingredients in traditional medicine to prevent or treat diabetes and cancer is becoming more prevalent because of their capacity to function as antioxidant agents. The objective of the research was to estimate the quantities of total phenols and flavonoids, together with the antioxidant capacity of various Dactylorhiza hatagirea extracts.
MethodsTotal flavonoid and phenolic contents were determined by aluminum chloride and Folin-Ciocalteu techniques, respectively. 2,2-Diphenyl-1-picrylhydrazyl (DPPH) and 2,2-azino-bis (3-ethylbenzothiazoline-6-sulphuric acid (ABTS) approaches were used for assessing the scavenging of free radicals. Employing standard methods, the preliminary phytochemical activity of the extract was assessed, and its reducing power was tested in the presence of potassium hexacyanoferrate.
ResultsA maximum concentration of 58.88 ± 0.32 of gallic acid was identified per gram of methanolic extract as phenolic content. Quercetin, at 85.51 ± 0.40 mg/gram, had the most flavonoid content. The strongest reducing power output measured was 1.968 ± 0.01 g. In comparison, the IC50 values for DPPH and ABTS assays were 162.79 ± 0.24 and 39.75 ± 0.20 µg/ml, respectively. Thus, this plant differs from others in that it has potent antioxidant capabilities.
ConclusionThe methanolic crude extract of D. hatagirea and the estimated contents of phenols and flavonoids exhibited potent antioxidant action, particularly against DPPH and ABTS assays. Due to its relatively high phenolic and flavonoid contents, this plant is an exciting option for treating diseases. Therefore, secondary metabolites can be found and employed as low-resistance, multi-target antioxidant drugs for treating a variety of cancers, cardiovascular and neurodegenerative disorders, as well as other chronic diseases that are resistant to existing antibiotics. Our plant will be patented for its pharmacological applications.
-