Letters in Drug Design & Discovery - Volume 21, Issue 17, 2024
Volume 21, Issue 17, 2024
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Targeting Angiotensin-converting Enzyme Inhibitor via Enalapril Reduces Postsurgical Adhesion Band Formation
BackgroundPostoperative adhesions commonly occur after abdominal surgery and can lead to significant complications. There is increasing evidence that targeting the renin-angiotensin system (RAS) can reduce inflammation and fibrosis. This study investigates the therapeutic potential of enalapril, an RAS inhibitor, in a rat model of postsurgical adhesion band formation.
MethodsA total of 12 male albino Wistar rats received intraperitoneal administration of enalapril (10 mg/kg). After 9 days, the anti-inflammatory and antifibrotic effects were evaluated using RT-PCR and ELISA, alongside hematoxylin and eosin and Masson's trichrome staining.
ResultsThe statistical analysis of findings showed that enalapril significantly reduced the frequency and stability of adhesion bands. It attenuated submucosal edema by suppressing pro-inflammatory cytokines, decreasing pro-inflammatory cell infiltration, and inhibiting oxidative stress at the peritoneal surgery site. Additionally, enalapril inhibited fibrotic adhesion band formation by reducing collagen deposition and suppressing the expression of profibrotic genes in peritoneal adhesion tissues.
ConclusionThese findings demonstrate the therapeutic potential of enalapril in preventing postsurgical adhesion band formation by inhibiting key pathological responses of inflammation and fibrosis, supporting its use as a preventive treatment in postoperative adhesion management.
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Synthesis and Anti-proliferative, Tyrosine Kinases Inhibitions of New Xanthene Derivatives and their Morphological Studies
Authors: Rafat M. Mohareb and Maken Mohamed AhmedBackgroundIn the field of pharmaceutical chemistry, the anti-cancer activity of such compounds received great attention. For both medicinal and industrial studies. Xanthene derivatives are important class of compounds that have had many applications and this enhanced their uses in recent years. Xanthene and its derivatives are extensively used scaffolds in drug designing and the development of novel anti-cancer agents due to their large pharmaceutical applications.
ObjectiveThe 3,3-dimethyl-2,3-dihydro-1H-xanthen-1-one was used to synthesise anti-cancer agents of fused pyran, pyridine, pyridazine, and thiophene derivatives. As the potentially privileged scaffolds, xanthene-fused bicyclic heterocycles may be used to discover new drugs with similar biological targets and improved therapeutic efficacy.
MethodsThe key starting compound the 3,3-dimethyl-2,3-dihydro-1H-xanthen-1-one that was used in many heterocyclization reactions through its reactions with different reagents like aryldiazonium salts, reaction with S8 and producing fused tetracyclic compounds.
ResultsThrough this work, new compounds were synthesized, characterized, and evaluated toward the six cancer cell lines, namely A549, HT-29, MKN-45, U87MG, and SMMC-7721 and H460. The inhibitions on tyrosine kinases c-Kit, Flt-3, VEGFR-2, EGFR, and PDGFR for selected compounds were studied and the results were supplied by studying the mechanism of action toward EGFR. Furthermore, the morphological changes of selected cell lines by the effect of compounds 6b and 13c were studied.
ConclusionWe focused our attention on the synthesis of heterocyclic compounds based on xanthene moiety. After a detailed optimization study, many of the synthesized compounds can be considered anticancer agents, enhancing further studies.
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Physicochemical, ADMET Properties, and Molecular Docking Studies of N-benzoyl-N’-naphtylthiourea Derivatives for Anti-breast Cancer Activity
Authors: Dewi Sinta Megawati, Juni Ekowati and Siswandono SiswodihardjoBackgroundN-benzoyl-N'-naphthylthiourea (BNTU) is a thiourea-derived compound that is predicted to have anti-breast cancer activity. However, their physicochemical properties, ADMET, and receptor-specific targets for their anti-breast cancer activity have not been reported.
ObjectiveThis study aimed to predict the physicochemical properties, ADMET, and anti-breast cancer activity of BNTU and its derivatives by in silico approach.
MethodsThe physicochemical and ADMET properties were predicted using the pkCSM online program and ProTox-II online tool. While the anti-breast cancer activity was predicted using the molecular docking method through the Molegro Virtual Docker (MVD) program on the HER-2 receptor. The parameter observed in the molecular docking method was the bond energy value or rerank score (RS). Compounds with small RS values were predicted to have a great activity.
ResultsMost BNTU derivatives had lower RS values than BNTU, especially 4TBBNTU, and 4CFBNTU, although their RS values were still higher than lapatinib and TAK-285. As for the reference ligand hydroxyurea, the RS value of BNTU and its derivatives was much lower. The physicochemical and pharmacokinetic properties (ADMET) of lapatinib and TAK-285 were not better than that of BNTU and its derivatives.
ConclusionFive compounds that deserve to be synthesized and tested for anti-breast cancer activity in vitro and in vivo are 4TBBNTU, 3CFBNTU, 4CFBNTU, 4OCBNTU, and the lead compound BNTU.
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Exploring New Potential Pkcθ Inhibitors Using Pharmacophore Modeling, Molecular Docking Analysis, and Molecular Dynamics Simulations
Authors: Yao Yao, Wen-Wei Pang, An-Zheng Hu, Hai-Yan Chen and Zhong-Quan QiBackgroundIt has been reported that PKCθ plays an important role in the immune response by regulating the cellular activity of T cells and, thus, the production of immune factors such as IL-2.PKCθ protein is mainly expressed in T lymphocytes but not much in other cells and has a very good specificity. Therefore, it is very meaningful to use PKCθ protein as a novel target for immunosuppression. PKCθ is a valuable target that can be used to develop meaningful novel selective immunosuppressive agents.
MethodsIn this study, we constructed a 3-characteristic pharmacophore(RHA)and used it to perform a virtual screening of the database. Then, we performed a molecular docking analysis of the compounds that scored high. The top five compounds with molecular docking scores were used as lead compounds, and structure-based ligand design via fragment substitution was applied to them, resulting in 20077 new compounds. We performed molecular docking analysis, binding free energy calculations, molecular dynamics simulation, and ADMET prediction on these new compounds and finally identified two compounds as new PKCθ inhibitors.
Results and DiscussionThrough the screening of pharmacophore, molecular design based on fragment substitution, molecular docking, we finally obtained two small molecules with higher scores than the positive control, in which the molecular docking score of P01 was -53.88 kcal/mol, and the molecular docking score of P02 was -51.20 kcal/mol, and then we performed the molecular dynamics simulation, free energy of binding calculations, and the prediction of ADMET properties for the compounds. The results showed that the ligands could form more stable complexes with the proteins, the binding free energy calculations of the ligand molecules were better than the positive control, all of them had good ADMET properties, and the compounds all had good drug similarity.
ConclusionOur results provided 2 new ligands that could serve as lead compounds for new PKCθ inhibitors in the future.
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Computational Design of a Novel Inhibitor against COVID
BackgroundIn recent years, in silico computational approaches have tremendously guided computational medicinal chemists and research scientists to analyze protein structures, kinetics, functions, and molecular interactions of the administered drugs.
ObjectiveThis study aimed to identify a novel inhibitor against SARS-CoV-2 using human CD26 and modeled spike protein through suitable in silico approaches.
MethodsIn this work, molecular docking and molecular dynamics simulation experiments were conducted to gain insights into the binding affinity and stability, respectively. The docked complex of CD26 with modeled spike protein showed higher binding affinity than the complex of CD26 with resolved spike protein due to the existence of strong interactions with the crucial amino acid residues of the target proteins.
ResultsThe results of the molecular dynamics simulation demonstrated that CD26 with the modeled spike protein docked complex showed good stability when compared with the resolved protein.
ConclusionFrom this computational finding, it was also suggested that the structure was stable and would rapidly guide the discovery of potential inhibitors against COVID-19.
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Indirubin as an AHR Ligand: A Combined Network Pharmacology and Experimental Approach to Psoriasis Therapy
Authors: Lihong Yang, Xueli Cheng, Qian Li, Guandong Liu, Yu Lin, Muchen Xu, Wen Sun and Jing LiuBackgroundAHR and its signaling pathways are promising therapeutic targets for psoriasis. Recent studies in traditional Chinese medicine have confirmed that Indirubin acts as an efficient ligand of AHR, inhibiting the inflammatory response. Clarifying its mechanism of action remains essential.
ObjectiveThis study uses bioinformatics to predict Indirubin’s potential molecular mechanism in treating psoriasis and validate the results in animal models.
MethodsIndirubin and psoriasis-related targets were screened using the TCMPSP, GeneCards, and OMIM databases. Using the STRING database, a network was constructed and enriched for target protein function. Imiquimod was used to validate the core targets in a psoriasis-like mouse model.
ResultsNetwork pharmacology suggested that indirubin targets pathways mainly involved in cancer, inflammation, apoptosis, and other disease mechanisms, including PI3K-Akt, IL-17, and TNF pathways related to psoriasis pathogenesis. Indirubin significantly affected the severity of imiquimod-induced skin lesions in psoriasis-like mice. It also inhibited the expression of IL-6 and il-1β inflammatory factors and rescued p65 and p-p65 expressions in psoriasis-like mice.
ConclusionNetwork pharmacology, combined with in vitro cellular experiments, tentatively confirmed that Indirubin reduces the inflammatory response in psoriasis-like mice through the AHR/NF-κB signaling pathway.
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The Therapeutic Potential of Ganoderma lucidum Karst and Ziziphus jujuba Mill for Postsurgical Adhesion Band Formation
Authors: Ghazaleh Khalili-Tanha, Seyedeh Elnaz Nazari, Fereshteh Asgharzadeh, Leila Mobasheri, Maryam Babaei, Hamideh Naimi, Mina Maftooh, Seyed Mahdi Hassanian, Moein Eskandari, Mohammad Mostafa Askarnia-Faal, Maryam Alaei, Hamid Reza Ghorbani, Mohsen Aliakbarian, Gordon Ferns, Majid Khazaei and Amir AvanBackgroundIntra-abdominal adhesions are a commonly occurring postoperative complication following abdominopelvic surgery. Peritoneal adhesion formation can lead to infertility, chronic pelvic pain, and intestinal obstruction. The anti-inflammatory and anti-oxidant activities of Ganoderma lucidum Karst (G. lucidum) and Ziziphus jujuba Mill (Z. jujuba) have been reported. Here, we have explored the therapeutic potential of Ganoderma lucidum Karst (G. lucidum) and Z. jujuba against postsurgical adhesion band formation. The NC3Rs ARRIVE guidelines were followed during experimental studies.
MethodsG. lucidum powder (800 mg/kg) and Z. jujuba powder (400 mg/kg) were administered using oral gavage to different groups of male albino Wistar rats. After ten days of treatment, macroscopic evidence for peritoneal adhesions and adhesion band score were determined. Furthermore, the anti-inflammatory and antifibrosis effects of G. lucidum and Z. jujuba were assessed using histopathology, ELISA, and real-time polymerase chain reaction methods. Also, alterations in some oxidative stress parameters were evaluated.
ResultsG. lucidum and Z. jujuba significantly decreased adhesion bands and were associated with a reduction in inflammatory cell infiltration into damaged tissues and the mRNA and protein expression of inflammatory cytokines via modulation of TNF-α, IL-6, IL-1β, and TGF-β. Moreover, both agents inhibited fibrotic adhesion band formation by decreasing collagen deposition and reducing profibrotic marker expression, Col1A1, at the peritoneum adhesion tissues. G. lucidum and Z. jujuba improved some antioxidant factors in rats’ adhesion tissues. The result of LC-MS showed that Ganoderma lucidum Karst and Ziziphus jujuba Mill consist of components with antioxidant activity, including ganoderic acid, lucidenic acid, quercetin, linoleic acid, malic acid, and benzoic acid.
ConclusionThe results have demonstrated the therapeutic potential of G. lucidum and Z. jujuba in reducing peritoneal adhesion through anti-inflammatory and anti-fibrotic properties, indicating their promising value as a new therapeutic approach in preventing postsurgical adhesion.
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Therapeutic Potential of Colchicum luteum against Flagellin (FliC) in Salmonella typhimurium: An In silico Approach
Authors: Mohammed Naveez Valathoor and Subhashree VenugopalBackground and ObjectivesSalmonella typhimurium is a foodborne pathogen that is a major concern for global health. Flagellin (FliC) is an essential protein in Salmonella typhimurium for both motility and virulence and is a key component of flagella. Hence, focusing on FliC protein is a promising strategy for developing new anti-Salmonella agents. Colchicum luteum, a medicinal plant, shows promising antimicrobial properties. Thus, this study explores the therapeutic potential of Colchicum luteum against FliC protein using computational methods in comparison to the standard antibiotic ciprofloxacin.
MethodsMolecular docking simulation was performed to evaluate the binding affinity and interaction pattern of bioactive compounds present in Colchicum luteum and ciprofloxacin against FliC protein. This study also analysed protein stability and dynamics studies of the apoprotein, ciprofloxacin, kesselringine, and gloriosine complexes using molecular dynamic (MD) simulation. The MMGBSA method computed binding free energies.
ResultsThrough docking simulations, it was found that gloriosine and kesselringine have strong binding affinity with FliC protein, similar to ciprofloxacin. MD simulation showed consistent protein-ligand complexes during the entire simulation. The MMGBSA analysis confirmed the positive interactions observed in the docking results, showing binding free energies similar to ciprofloxacin.
ConclusionThis study suggests that the phytocompounds of Colchicum luteum shows promising therapeutic potential as a source for creating anti-Salmonella typhimurium agents that target FliC protein. These results suggest that Colchicum luteum may have therapeutic potential against Salmonella typhimurium infections and should be further studied through in vitro and in vivo experiments.
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Structural Optimization of Quinazolin-4-one Derivatives as Novel SARS-CoV-2 Mpro Inhibitors by Molecular Simulation
Authors: Jinping Wu, Peng Li, Yucheng Mu, Ruiguang Peng, Zhongyao Zhao, Jinke Lei, Aiping Tu, Zhiting Gao, Yixiao Bai and Gang WuBackgroundSevere acute respiratory syndrome coronavirus 2 main protease (SARS-CoV-2 Mpro) has been shown to be an effective target for inhibiting novel coronaviruses, which can be used as a crucial breakthrough for developing drugs to treat the coronavirus disease 2019 (COVID-19).
MethodsTo design novel SARS-CoV-2 Mpro inhibitors, we conducted 3D-QSAR, molecular docking, and molecular dynamics (MD) simulation on 64 quinazolin-4-one derivatives.
ResultsComparative molecular field analysis (CoMFA) model (q2 = 0.590, R2 = 0.962), comparative molecular similarity index analysis (CoMSIA) model (q2 = 0.628, R2 = 0.923), and external validation indicated that the stability, reliability, and prediction performance of our constructed model were excellent. We designed 8 inhibitors with stronger antiviral activities through the three-dimensional equipotential field. Molecular docking and MD simulation probed the interactions of compounds and SARS-CoV-2 Mpro. This indicated that amino acid residues, including Met165, Met49, and Cys145, were very important in combination with the compounds. The prediction results of ADME/T and Lipinski’s rule of five indicated that the new compounds had favorable drug-like and pharmacokinetic properties.
ConclusionThis study provided new ideas for exploring novel SARS-CoV-2 Mpro inhibitors against COVID-19 in the future.
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Carya Illinoinensis-mediated Green Synthesis and Antimicrobial Screening of Zirconium Oxide Nanoparticles: The Promising Antimicrobial Agent
BackgroundThe synthesis of metal-based nanoparticles through conventional methods involves harsh conditions, high costs, and severe environmental threats. To overcome these issues, researchers are nowadays focusing on eco-friendly and low-cost methods for the synthesis of nanoparticles. Finally, several plant-mediated synthesis techniques have been developed, which have various advantages, such as low-cost, environmentally friendly, and easy application. The plant extract not only serves as a reducing agent but also plays a role as a stabilizing agent. The plant-mediated synthesis provides new opportunities for cost-effective, environmentally-friendly nanoparticle synthesis with high dispersity and stability. Besides, bio-generated nanoparticles derived from plant extract have promising pharmacological applications, making them potential candidates for future medicines.
Aims and ObjectivesThe current study aimed to synthesize zirconium oxide nanoparticles using Carya illinoinensis extract and examine their physicochemical properties. Additionally, the antimicrobial efficacy of these nanoparticles was evaluated against various pathogens, exploring their potential as potent antimicrobial agents.
MethodsThe synthesized nanoparticles were analyzed and characterized by various techniques like UV-Vis spectroscopy, Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM), and Energy Dispersive X-ray spectroscopy (EDX). The UV-visible peak at 216 nm confirmed the formation of ZrO2 nanoparticles. The SEM images clearly showed that nanoparticles were spherical and relatively dispersed, with few agglomerations. The EDX spectra confirmed the existence of zirconium and oxygen as the basic constituents of the sample. TEM images demonstrated nanoparticles as spherical and uniformly dispersed but agglomerated with increasing precursor concentrations and decreasing nanoparticle dispersion. Fluconazole and gentamicin were used as standards in determining the antibacterial and antifungal activities of nanoparticles.
ResultsConsidering the antifungal activity, a maximum zone of inhibition of 16 µg/ml was demonstrated in the case of 2 mM as compared to 4 mM and 6 mM concentrations. The Carya illinoinensis-mediated ZrO2 nanoparticles were screened against Gram-positive (S. aureus and P. aeruginosa) and Gram-negative (S. typhi and E. coli) bacterial strains. The fabricated nanoparticles exhibited promising action against all microorganisms.
ConclusionIn the current study, zirconium oxide nanoparticles were synthesized by using Carya illinoinensis leaves extract as a reducing agent. The antifungal and antibacterial potential of the synthesized nanoparticles were evaluated. The green synthesis method used in this study is preferable to the others as it is more affordable, environmentally benign, and widely accessible.
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Exploring the Mechanism of Influence of Wolfberry (Lycium barbarum L.) on Pulmonary Arterial Hypertension Based on Network Pharmacology and Molecular Docking
Authors: Yang Wu, Jingjing Niu, Lei Bu, Cong Li, Yuxin Liu, Jinrui Jiang, Qingbin Xu, Ping Ma and Ru ZhouPurposeThis study mainly made use of network pharmacology and molecular docking to analyze the therapeutic mechanism of pulmonary arterial hypertension (PAH) by the traditional medicinal food plant Lycium barbarum L. in Ningxia.
MethodsThe related targets and active compounds in PAH and Lycium barbarum L. were analyzed through the Traditional Chinese Medicine Systematic Pharmacology Database and Analysis Platform (TCMSP), GeneCards databases, Online Mendelian Inheritance in Man (OMIM) databases、Cytoscape (3.7.1) software、the STRING database、the Database for Annotation Visualization and Integrated Discovery (DAVID) database. In addition, the main active compounds were molecularly docked with key targets.
ResultsThe results showed that 35 active ingredients of Lycium barbarum L. were obtained. The protein-protein interaction (PPI) network includes 140 potential target proteins. Gene Ontology (GO) enrichment analysis yielded 34 entries from three parts: biological processes, cell composition, and molecular function. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis obtained 157 pathways, mainly involving Chemical carcinogenesis receptor activation, Lipid and atherosclerosis, Hepatitis B/C, Chemical carcinogenesis reactive oxygen species, as well as Signaling pathways such as HIF-1, TNF, PI3K-Akt, and MAPK. Molecular docking results showed that the affinity of the key targets to quercetin is less than -5 kcal/mol, and the affinity with betaine is less than 0.
ConclusionIn conclusion, it was preliminarily predicted that the active compounds of Lycium barbarum L., such as quercetin and betaine, acted on key targets such as AKT1, EGFR, MYC played an intervention role in PAH by regulating multiple signaling pathways, which provided a theoretical basis for the development and application of Lycium barbarum L. and the treatment of PAH.
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Evaluation of the Impact of Pistacia atlantica Desf. Oleo-gum Resin on Complete Freund’s Adjuvant-induced Arthritis in a Wistar Rat Model
Authors: Mobina Toofan, Pardis Mohammadi Pour, Amir Kiani, Sajad Fakhri and Mohammad Hosein FarzaeiBackgroundPistacia atlantica Desf., also known as Atlantic pistachio or Mt. Atlas mastic tree, has been used in traditional medicine for its anti-inflammatory properties, helping to reduce inflammation in conditions like arthritis. Additionally, the tree's resin possesses antioxidant properties that can help protect against oxidative stress.
The anti-arthritic efficacy of Pistacia atlantica oleo-gum resin extract (PAG) remains unvalidated, as its potential therapeutic benefits have not been substantiated. In the current investigation, we have substantiated the inhibitory properties of the PAG in mitigating the development of rheumatoid arthritis induced by Complete Freund's Adjuvant in rats.
MethodsMale Wistar rats weighing 160±10 g were subjected to immunization through intradermal injection of 0.1 mL of Complete Freund's Adjuvant (CFA) into the left hind metatarsal footpad. Following the induction of adjuvant arthritis, oral administration of PAG was initiated at doses of 10, 400, and 800 mg/kg once a day. Prednisolone (10 mg/kg, daily) was employed as a positive control in this study. Various parameters, including paw swelling, arthritic index, body weight loss, spleen index, thymus index, serum cytokines, inflammatory mediators, and histological alterations, as well as nitrite glutathione and catalase level, were measured. Furthermore, the expression and activity of matrix metalloproteinase (MMP)-2 and MMP-9 were evaluated.
ResultsPAG exhibited noteworthy efficacy in attenuating paw swelling and reducing the arthritic index. Moreover, it resulted in enhanced body weight loss and a consequential reduction in the thymus index. PAG (400mg/kg) significantly decreased the level of serum nitrite in the intervention group, as well as the levels of serum glutathione. On the other hand, catalase activity increased, the activity of MMP-9 decreased, and the level of MMP-2 increased compared to the intervention group. The histopathological results revealed that PAG (at doses of 400 mg/kg) had the best therapeutic effects.
ConclusionIn conclusion, the present study confirms the anti-arthritic activity of PAG in rats. The extract of PAG was found to prevent rheumatoid arthritis induced by Complete Freund's Adjuvant, as evidenced by the significant suppression of paw swelling and arthritic index.
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The Therapeutic Potential of Metformin for Attenuating Postsurgical Adhesion Band Formation
ObjectivesIntra-abdominal adhesions are the most frequently occurring postoperative complication following abdominopelvic surgery. Peritoneal adhesion formation can lead to infertility, chronic pelvic pain, and intestinal obstruction. Several studies have shown the potential role of metformin in reducing inflammation. Here, we explored the therapeutic potency of Metformin against postsurgical adhesion band formation.
MethodsWe adopted Animal Research: Reporting of In Vivo Experiments (ARRIVE) guidelines for the experimental protocol. Peritoneal adhesions were examined macroscopically. Metformin (100 mg/kg) was administered intraperitoneally in male albino Wistar rats. After 9 days, macroscopic evidence and score of fibrotic bands based on scaling methods were performed and evaluated by the Nair and Leach scoring system. Moreover, the anti-inflammatory and antifibrosis effects were investigated by using hematoxylin and eosin, Masson's trichrome staining, the enzyme-linked immunosorbent assay (ELISA), and reverse transcription polymerase chain reaction (RT-PCR).
ResultsMetformin inhibited the stabilization of adhesion bands and appeared to elicit anti-inflammatory responses by attenuating submucosal edema, suppressing proinflammatory cytokines, decreasing proinflammatory cell infiltration, and inhibiting oxidative stress at the site of peritoneal surgery. We also showed that metformin prevents fibrotic adhesion band formation by reducing excessive collagen deposition and suppression of profibrotic gene expression at the peritoneum adhesion tissues via modulation of Col 1A1/A3.
ConclusionThese results supported the potential application of metformin in preventing postsurgical adhesion band formation by inhibiting key pathologic responses of inflammation and fibrosis in patients post-surgery.
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Exploring the Antitumor Potential of New Indazole-indolizines Designed by Molecular Hybridization
Authors: Liliana Ciurlă-Lucescu, Elena Bîcu, Dalila Belei and Alina GhinetBackgroundCancer represents the major health problem faced by the population of the world, remaining one of the main causes of death. Hence, the development of new targeted antitumor drugs with high efficacy and lower toxicity is still needed.
ObjectiveAs a continuation of our work to discover new molecules with cytotoxic properties, two heterocyclic scaffolds, namely indolizine, and indazole, were combined in the same molecule, aiming to improve the bioactivity. This article focused on the synthesis, characterization, and biological evaluation of a series of new indazole-indolizine hybrid compounds.
MethodsThe biological potential of the synthesized compounds was investigated in vitro against the human farnesyltransferase enzyme and NCI 60 tumor cell lines panel. While the farnesyltransferase inhibitory activity was modest, a very good antiproliferative action was observed for compound 4a, which, at a concentration of 10 µM, inhibited the growth of 20 types of cancer cells by more than 50% and showed cytotoxic action against the ovarian cancer cell line OVCAR-4.
ResultsA series of novel indazole-indolizine hybrids were synthesized via a [3+2] cycloaddition reaction, fully characterized and biologically evaluated for antitumor potential.
ConclusionCompound 4a could be a promising starting point in the development of new antitumoral agents. Further biological investigations will be performed to identify the biological target of the compounds. Moreover, different synthetic strategies to introduce new substituents on the indolizine core will be addressed.
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Design, Synthesis, Biological Evaluation, Molecular Docking, and Molecular Dynamics Simulation Studies of Fmoc-L-Lysine Carboxamides as Promising Cytotoxic Agents
Authors: Mahalakshmi C.S. Parepalli and Rajitha GallaBackgroundDespite advancements in treatment modalities, the search for new cytotoxic agents remains vital in the fight against cancer. This ongoing effort aims to introduce novel molecules that serve as potent cytotoxic agents while minimizing adverse effects.
ObjectiveThe objective of the study is to design, synthesize, and evaluate Fmoc-L-Lysine Carboxamides for cytotoxic activities.
MethodsThe title compounds 4a-l were synthesized by esterification followed by reduction of Fmoc-Lys (Boc)-OH to alcohol, then coupled with various aryl/alkyl/alicyclic carboxylic acids. These compounds were then analysed using 13C NMR, 1H NMR, FT-IR, and Mass spectroscopic techniques and evaluated for cytotoxic activity by MTT assay, apoptosis induction, cell cycle analysis, EGFR-TK inhibition activity, molecular docking, and molecular dynamics simulation studies.
ResultsThe results obtained by MTT assay indicated that compounds 4f and 4i demonstrated significant cytotoxicity against A549 and SKOV3 cell lines, with IC50 values of 2.75 and 1.91μM compared to doxorubicin. Further, the analysis of the Cell cycle and apoptosis proposed that 4f arrested the cell cycle in the G0/G1 phase, whereas 4i arrested the cell cycle in the G2/M phase and triggered apoptosis in cancer cells. Notably, compound 4i demonstrated the highest inhibition of EGFR with IC50, 0.189μM, and acted as its potential inhibitor. Molecular docking and dynamics simulation studies further confirmed the stability of 4i in the active site of EGFR.
ConclusionOverall, these results suggested that the synthesized derivatives offer a promising approach for the advancement of new and effective cancer therapies.
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Mechanism of Trigonella Foenum-graecum L. against Type 2 Diabetes Mellitus: Research on Network Pharmacology & Experimental Verification
Authors: Wenya Liu, Hongting Ma, Jun Luo and Yanfeng HeObjectiveThe aim of this study was to explore the mechanisms of Trigonella foenum-graecum L. (T. foenum-graecum) in the treatment of type 2 diabetes mellitus (T2DM).
MethodsThe TCSMP database was utilized to obtain the constituents and targets of T. foenum-graecum. The OMIM database was used at GeneCard to acquire T2DM targets. The STRING database was used to plot the PPI network. KEGG and GO analyses were performed using the DAVID database. HepG2 cells were induced to construct an insulin resistance (IR) model by a complex composed of glucose and oleic acid, and cell viability, inflammatory factors, and RAGE/PI3K/Akt signaling pathway were verified by in vitro cell experiments.
ResultsIn the network pharmacology study, 14 active ingredients were screened, corresponding to 280 targets. There were 1477 targets associated with T2MD. These components may act on core targets of T2DM, such as AKT1, TNF, and IL-6, and regulate signaling pathways such as cancer pathway and AGE-RAGE to play an anti-T2DM role. In vitro results showed that quercetin and kaempferol with 5, 10, 25 μmol·L-1 and diosgenin with 0.5, 1, 2 μmol·L-1 could reduce the expression of TNF-α and IL-6 in IR-HepG2 cells, down-regulate the expression of RAGE, up-regulated the expression of p-PI3K/PI3K and p-Akt/Akt.
ConclusionThe research explored the mechanism of T. foenum-graecum anti-T2DM, which may be helpful for the development of anti-T2DM drugs for T. foenum-graecum.
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Bcr-Abl Inhibitory Activities of Imatinib Derivatives
Authors: Bao-Long Hou, Jiaxu Yan, Rongrong Liu, Longquan Lv, Ruirui Feng, Xiumei Yang, Guanlin Guo and Cuiling WangBackgroundImatinib, a frontline targeted-therapeutic agent for patients with chronic myelogenous leukemia (CML), was a synthetic tyrosine kinase inhibitor approved by the US Food and Drug Administration.
ObjectiveTo expand the structural diversity of Bcr-Abl inhibitors, we synthesized nine novel imatinib analogues (1a-1i) and evaluated their cytostatic effects against human cancer cell lines in vitro.
MethodsImatinib and its analogues were successfully synthesized by an improved method in six main steps. Inhibitory activities of all compounds were evaluated on K562, HL-60, MCF-7, A549 and PBMC in vitro. Then, the effect of the most active compound was studied using flow cytometer, real-time qPCR and western blot experiments to determine its mechanism action. Finally, the molecular docking of the most active compound were determined.
ResultsThe IC50 of one imatinib analogue (compound 1h) for K562 and HL-60 was lower than imatinib itself. Further studies indicate that the pro-apoptotic effect of compound 1h on K562 cells was stronger than imatinib over a range of concentrations. Importantly, the real-time qPCR and western blot experiments showed that compound 1h was superior to imatinib in inhibiting Bcr-Abl expression. The structure-activity relationship was analyzed by determining the inhibitory rate of each imatinib analogue. Introducing benzene (A ring) and piperidine (E ring) rings instead of pyridine (A ring) and piperazine (E ring) in imatinib significantly enhanced the potency of imatinib against K562 and HL-60 cell lines, which is consistent with the docking results.
ConclusionImatinib analogue 1h showed a better inhibitory effect on leukemia cell lines than other cell lines, which was consistent with the imatinib-like structure, moreover, had little effect on PBMC. Overall, we conclude that compound 1h has the potential to treat chronic myeloid leukemia.
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Exploring the Mechanism of Action of Lycium barbarum in Treating Allergic Rhinitis Using Network Pharmacology and Molecular Docking
Authors: Hui Shao, Ning Wang, Jing Kang, Kaizhi Zheng, Zheng Ma, Jing Yang, Xiaoling Yang and Li HouObjectiveApproximately 10%-40% of the global population is affected by allergic rhinitis, and Lycium barbarum has a long history of dual use as a herbal medicine and also as a food. This study utilized network pharmacology and molecular docking to explore the mechanism of action of Lycium barbarum in treating allergic rhinitis.
MethodsWe screened active ingredients and potential action targets of Lycium barbarum using the TCMSP database. Relevant targets for allergic rhinitis diseases were accessed through the GeneCards and OMIM databases. GO function enrichment and KEGG pathway enrichment analyses of key targets were conducted using the DAVID database. Molecular docking validation was performed using Autodock Vina software to confirm the affinity between the core protein targets and the key active ingredients.
ResultsNetwork pharmacological analysis identified 35 major active ingredients of Lycium barbarum, 87 drug targets, and 2200 disease targets. GO functional analysis and KEGG pathway enrichment analysis revealed that the mechanism of action of Lycium barbarum in treating allergic rhinitis involves multiple pathways, including the HIF-1 signaling pathway, IL-17 signaling pathway, and TNF signaling pathway. Molecular docking results demonstrated good binding activity between the main active ingredients and the core protein target.
ConclusionLycium barbarum exhibits multi-component, multi-target, and multi-pathway actions in treating allergic rhinitis by regulating relevant pathways and targets.
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