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2000
Volume 32, Issue 33
  • ISSN: 0929-8673
  • E-ISSN: 1875-533X

Abstract

Background

PTK7 (Protein Tyrosine Kinase 7), a member of the receptor protein tyrosine kinase family, was originally discovered in colon cancer cells. It plays a pivotal role in numerous developmental and physiological processes, particularly in the regulation of cell polarity. Despite accumulating evidence of PTK7's significant influence on tumor development, a comprehensive pan-cancer analysis of PTK7 has yet to be conducted.

Methods

We conducted a comprehensive analysis of PTK7's expression, prognostic value, and mutational patterns across various tumor types. We further explored the correlations between PTK7 expression and tumor stemness, immune-related genes, immune scores, and immune cell infiltration.

Results

Enrichment analysis revealed PTK7's critical involvement in pan-cancer functions and processes, including the WNT pathway, Epithelial-Mesenchymal Transition (EMT), and cell polarity regulation. Additionally, we validated PTK7's expression in gastric cancer immunohistochemistry.

Conclusion

Our study indicates that PTK7 holds promise as an ideal pan-cancer biomarker due to its involvement in tumor progression and tumor immunity.

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References

  1. EllenbroekS.I.J. IdenS. CollardJ.G. Cell polarity proteins and cancer.Semin. Cancer Biol.201222320821510.1016/j.semcancer.2012.02.01222465739
    [Google Scholar]
  2. KatohM. WNT/PCP signaling pathway and human cancer (Review).Oncol. Rep.20051461583158810.3892/or.14.6.158316273260
    [Google Scholar]
  3. GruszkaA.M. ValliD. AlcalayM. Wnt signalling in acute myeloid leukaemia.Cells2019811140310.3390/cells811140331703382
    [Google Scholar]
  4. YangJ. AntinP. BerxG. BlanpainC. BrabletzT. BronnerM. CampbellK. CanoA. CasanovaJ. ChristoforiG. DedharS. DerynckR. FordH.L. FuxeJ. García de HerrerosA. GoodallG.J. HadjantonakisA.K. HuangR.Y.J. KalcheimC. KalluriR. KangY. Khew-GoodallY. LevineH. LiuJ. LongmoreG.D. ManiS.A. MassaguéJ. MayorR. McClayD. MostovK.E. NewgreenD.F. NietoM.A. PuisieuxA. RunyanR. SavagnerP. StangerB. StemmlerM.P. TakahashiY. TakeichiM. TheveneauE. ThieryJ.P. ThompsonE.W. WeinbergR.A. WilliamsE.D. XingJ. ZhouB.P. ShengG. EMT International association (TEMTIA).Guidelines and definitions for research on epithelial–mesenchymal transition.Nat. Rev. Mol. Cell Biol.202021634135210.1038/s41580‑020‑0237‑932300252
    [Google Scholar]
  5. HalaouiR. McCaffreyL. Rewiring cell polarity signaling in cancer.Oncogene201534893995010.1038/onc.2014.5924632617
    [Google Scholar]
  6. KarnerC. WhartonK. CarrollT. Apical–basal polarity, Wnt signaling and vertebrate organogenesis.Semin. Cell Dev. Biol.200617221422210.1016/j.semcdb.2006.05.00716839789
    [Google Scholar]
  7. David MBryant. Keith EMostov. From cells to organs: Building polarized tissue.Nat Rev Mol Cell Biol.2008911887901
    [Google Scholar]
  8. AbedrabboM. SloomyS. Abu-LeilR. Kfir-CohenE. RavidS. Scribble, Lgl1, and myosin IIA interact with α-/β-catenin to maintain epithelial junction integrity.Cell Adhes. Migr.202317112310.1080/19336918.2023.226064537743653
    [Google Scholar]
  9. CaiT. PengJ. OmraneM. BenzoubirN. SamuelD. Gassama-DiagneA. Septin 9 orients the apico–basal polarity axis and controls plasticity signals.Cells20231214181510.3390/cells1214181537508480
    [Google Scholar]
  10. ZhangB. XieS. HuJ. LeiS. ShenL. LiuH. ZhengQ. ZhangZ. WuC. LiQ. WangF. Truncated SCRIB isoform promotes breast cancer metastasis through HNRNP A1 mediated exon 16 skipping.Acta Pharmacol. Sin.202344112307232110.1038/s41401‑023‑01116‑437402999
    [Google Scholar]
  11. NaH.W. ShinW.S. LudwigA. LeeS.T. The cytosolic domain of protein-tyrosine kinase 7 (PTK7), generated from sequential cleavage by a disintegrin and metalloprotease 17 (ADAM17) and γ-secretase, enhances cell proliferation and migration in colon cancer cells.J. Biol. Chem.201228730250012500910.1074/jbc.M112.34890422665490
    [Google Scholar]
  12. OnumaK. InoueM. Abnormality of apico–basal polarity in adenocarcinoma.Cancer Sci.2022113113657366310.1111/cas.1554936047965
    [Google Scholar]
  13. Guy Storme. Are we losing the final fight against cancer?Cancers202416242138275862
    [Google Scholar]
  14. BrayF. LaversanneM. SungH. FerlayJ. SiegelR.L. SoerjomataramI. JemalA. Global cancer statistics 2022: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.CA Cancer J. Clin.202474322926310.3322/caac.2183438572751
    [Google Scholar]
  15. SahinT.K. RizzoA. AksoyS. GuvenD.C. Prognostic significance of the royal marsden hospital (RMH) score in patients with cancer: A systematic review and meta-analysis.Cancers20241610183510.3390/cancers1610183538791914
    [Google Scholar]
  16. RizzoA. CusmaiA. AcquafreddaS. RinaldiL. PalmiottiG. Ladiratuzumab vedotin for metastatic triple negative cancer: preliminary results, key challenges, and clinical potential.Expert Opin. Investig. Drugs202231649549810.1080/13543784.2022.204225235171746
    [Google Scholar]
  17. GuvenD.C. SahinT.K. ErulE. RizzoA. RicciA.D. AksoyS. YalcinS. The association between albumin levels and survival in patients treated with immune checkpoint inhibitors: A systematic review and meta-analysis.Front. Mol. Biosci.20229103912110.3389/fmolb.2022.103912136533070
    [Google Scholar]
  18. Dall’OlioF.G. RizzoA. MollicaV. MassucciM. MaggioI. MassariF. Immortal time bias in the association between toxicity and response for immune checkpoint inhibitors: A meta-analysis.Immunotherapy202113325727010.2217/imt‑2020‑017933225800
    [Google Scholar]
  19. RizzoA. MollicaV. TateoV. TassinariE. MarchettiA. RoselliniM. De LucaR. SantoniM. MassariF. Hypertransaminasemia in cancer patients receiving immunotherapy and immune-based combinations: The MOUSEION-05 study.Cancer Immunol. Immunother.20237261381139410.1007/s00262‑023‑03366‑x36695827
    [Google Scholar]
  20. DunnN. TolwinskiN. Ptk7 and Mcc, unfancied components in non-canonical wnt signaling and cancer.Cancers2016876810.3390/cancers807006827438854
    [Google Scholar]
  21. WangX. GuoS. ZhouH. SunY. GanJ. ZhangY. ZhengW. ZhangC. ZhaoX. XiaoJ. WangL. GaoY. NingS. Immune pathways with aging characteristics improve immunotherapy benefits and drug prediction in human cancer.Cancers202315234210.3390/cancers1502034236672292
    [Google Scholar]
  22. DingY. WangH. LiuJ. JiangH. GongA. XuM. MBD3 as a potential biomarker for colon cancer: Implications for epithelial-mesenchymal transition (EMT) pathways.Cancers20231512318510.3390/cancers1512318537370795
    [Google Scholar]
  23. LyuC. WangL. StadlbauerB. BuchnerA. PohlaH. A pan-cancer landscape of abcg2 across human cancers: Friend or foe?Int. J. Mol. Sci.202223241595510.3390/ijms23241595536555598
    [Google Scholar]
  24. SunQ. DuJ. DongJ. PanS. JinH. HanX. ZhangJ. Systematic investigation of the multifaceted role of SOX11 in cancer.Cancers20221424610310.3390/cancers1424610336551589
    [Google Scholar]
  25. KimJ.H. ShinW.S. LeeS.R. KimS. ChoiS.Y. LeeS.T. Anti-PTK7 monoclonal antibodies exhibit anti-tumor activity at the cellular level and in mouse xenograft models of esophageal squamous cell carcinoma.Int. J. Mol. Sci.202223201219510.3390/ijms23201219536293051
    [Google Scholar]
  26. LinY. ZhangL.H. WangX.H. XingX.F. ChengX.J. DongB. HuY. DuH. LiY.A. ZhuY.B. DingN. DuY.X. LiJ.Y. JiJ.F. PTK7 as a novel marker for favorable gastric cancer patient survival.J. Surg. Oncol.2012106788088610.1002/jso.2315422585737
    [Google Scholar]
  27. MartinezS. ScerboP. GiordanoM. DaulatA.M. LhoumeauA.C. ThoméV. KodjabachianL. BorgJ.P. The PTK7 and ROR2 protein receptors interact in the vertebrate WNT/Planar cell polarity (PCP) pathway.J. Biol. Chem.201529051305623057210.1074/jbc.M115.69761526499793
    [Google Scholar]
  28. AtasevenB. AngererR. KatesR. GuneschA. KnyazevP. HögelB. BeckerC. EiermannW. HarbeckN. PTK7 expression in triple-negative breast cancer.Anticancer Res.20133393759376324023307
    [Google Scholar]
  29. KapoorS. Emerging new prognostic markers of gastric tumors besides PTK7.J. Surg. Oncol.2013107445010.1002/jso.2320922767429
    [Google Scholar]
  30. PrebetT. LhoumeauA.C. ArnouletC. AulasA. MarchettoS. AudebertS. PuppoF. ChabannonC. SaintyD. SantoniM.J. SebbaghM. SummerourV. HuonY. ShinW.S. LeeS.T. EsterniB. VeyN. BorgJ.P. The cell polarity PTK7 receptor acts as a modulator of the chemotherapeutic response in acute myeloid leukemia and impairs clinical outcome.Blood2010116132315232310.1182/blood‑2010‑01‑26235220558616
    [Google Scholar]
  31. LiuQ. ZhangC. YuanJ. FuJ. WuM. SuJ. WangX. YuanX. JiangW. PTK7 regulates Id1 expression in CD44-high glioma cells.Neuro-oncol.201517450551510.1093/neuonc/nou22725204555
    [Google Scholar]
  32. JungH.Y. FattetL. TsaiJ.H. KajimotoT. ChangQ. NewtonA.C. YangJ. Apical–basal polarity inhibits epithelial–mesenchymal transition and tumour metastasis by PAR-complex-mediated SNAI1 degradation.Nat. Cell Biol.201921335937110.1038/s41556‑019‑0291‑830804505
    [Google Scholar]
  33. RaivolaJ. DiniA. KarvonenH. PikiE. SalokasK. NiininenW. KalevaL. ZhangK. ArjamaM. GudoityteG. Seashore-LudlowB. VarjosaloM. KallioniemiO. HautaniemiS. MurumägiA. UngureanuD. Multiomics characterization implicates PTK7 in ovarian cancer EMT and cell plasticity and offers strategies for therapeutic intervention.Cell Death Dis.202213871410.1038/s41419‑022‑05161‑535977930
    [Google Scholar]
  34. TaiwenLi. JingyuFan. BinbinWang. NicoleTraugh. QianmingJun. TIMER: A web server for comprehensive analysis of tumor-infiltrating immune cells.Cancer Res20177721e108e11010.1158/0008‑5472.CAN‑17‑030729092952
    [Google Scholar]
  35. ShenW. SongZ. ZhongX. HuangM. ShenD. GaoP. QianX. WangM. HeX. WangT. LiS. Sangerbox: A comprehensive, interaction?friendly clinical bioinformatics analysis platform.Imeta202213e36
    [Google Scholar]
  36. MaltaT.M. SokolovA. GentlesA.J. BurzykowskiT. PoissonL. WeinsteinJ.N. KamińskaB. HuelskenJ. OmbergL. GevaertO. ColapricoA. CzerwińskaP. MazurekS. MishraL. HeynH. KrasnitzA. GodwinA.K. LazarA.J. StuartJ.M. HoadleyK.A. LairdP.W. NoushmehrH. WiznerowiczM. Caesar-JohnsonS.J. DemchokJ.A. FelauI. KasapiM. FergusonM.L. HutterC.M. SofiaH.J. TarnuzzerR. WangZ. YangL. ZenklusenJ.C. ZhangJ.J. ChudamaniS. LiuJ. LollaL. NareshR. PihlT. SunQ. WanY. WuY. ChoJ. DeFreitasT. FrazerS. GehlenborgN. GetzG. HeimanD.I. KimJ. LawrenceM.S. LinP. MeierS. NobleM.S. SaksenaG. VoetD. ZhangH. BernardB. ChambweN. DhankaniV. KnijnenburgT. KramerR. LeinonenK. LiuY. MillerM. ReynoldsS. ShmulevichI. ThorssonV. ZhangW. AkbaniR. BroomB.M. HegdeA.M. JuZ. KanchiR.S. KorkutA. LiJ. LiangH. LingS. LiuW. LuY. MillsG.B. NgK-S. RaoA. RyanM. WangJ. WeinsteinJ.N. ZhangJ. AbeshouseA. ArmeniaJ. ChakravartyD. ChatilaW.K. de BruijnI. GaoJ. GrossB.E. HeinsZ.J. KundraR. LaK. LadanyiM. LunaA. NissanM.G. OchoaA. PhillipsS.M. ReznikE. Sanchez-VegaF. SanderC. SchultzN. SheridanR. SumerS.O. SunY. TaylorB.S. WangJ. ZhangH. AnurP. PetoM. SpellmanP. BenzC. StuartJ.M. WongC.K. YauC. HayesD.N. ParkerJ.S. WilkersonM.D. AllyA. BalasundaramM. BowlbyR. BrooksD. CarlsenR. ChuahE. DhallaN. HoltR. JonesS.J.M. KasaianK. LeeD. MaY. MarraM.A. MayoM. MooreR.A. MungallA.J. MungallK. RobertsonA.G. SadeghiS. ScheinJ.E. SipahimalaniP. TamA. ThiessenN. TseK. WongT. BergerA.C. BeroukhimR. CherniackA.D. CibulskisC. GabrielS.B. GaoG.F. HaG. MeyersonM. SchumacherS.E. ShihJ. KucherlapatiM.H. KucherlapatiR.S. BaylinS. CopeL. DanilovaL. BootwallaM.S. LaiP.H. MaglinteD.T. Van Den BergD.J. WeisenbergerD.J. AumanJ.T. BaluS. BodenheimerT. FanC. HoadleyK.A. HoyleA.P. JefferysS.R. JonesC.D. MengS. MieczkowskiP.A. MoseL.E. PerouA.H. PerouC.M. RoachJ. ShiY. SimonsJ.V. SkellyT. SolowayM.G. TanD. VeluvoluU. FanH. HinoueT. LairdP.W. ShenH. ZhouW. BellairM. ChangK. CovingtonK. CreightonC.J. DinhH. DoddapaneniH.V. DonehowerL.A. DrummondJ. GibbsR.A. GlennR. HaleW. HanY. HuJ. KorchinaV. LeeS. LewisL. LiW. LiuX. MorganM. MortonD. MuznyD. SantibanezJ. ShethM. ShinbrotE. WangL. WangM. WheelerD.A. XiL. ZhaoF. HessJ. AppelbaumE.L. BaileyM. CordesM.G. DingL. FronickC.C. FultonL.A. FultonR.S. KandothC. MardisE.R. McLellanM.D. MillerC.A. SchmidtH.K. WilsonR.K. CrainD. CurleyE. GardnerJ. LauK. MalleryD. MorrisS. PaulauskisJ. PennyR. SheltonC. SheltonT. ShermanM. ThompsonE. YenaP. BowenJ. Gastier-FosterJ.M. GerkenM. LeraasK.M. LichtenbergT.M. RamirezN.C. WiseL. ZmudaE. CorcoranN. CostelloT. HovensC. CarvalhoA.L. de CarvalhoA.C. FregnaniJ.H. Longatto-FilhoA. ReisR.M. Scapulatempo-NetoC. SilveiraH.C.S. VidalD.O. BurnetteA. EschbacherJ. HermesB. NossA. SinghR. AndersonM.L. CastroP.D. IttmannM. HuntsmanD. KohlB. LeX. ThorpR. AndryC. DuffyE.R. LyadovV. PaklinaO. SetdikovaG. ShabuninA. TavobilovM. McPhersonC. WarnickR. BerkowitzR. CramerD. FeltmateC. HorowitzN. KibelA. MutoM. RautC.P. MalykhA. Barnholtz-SloanJ.S. BarrettW. DevineK. FulopJ. OstromQ.T. ShimmelK. WolinskyY. SloanA.E. De RoseA. GiulianteF. GoodmanM. KarlanB.Y. HagedornC.H. EckmanJ. HarrJ. MyersJ. TuckerK. ZachL.A. DeyarminB. HuH. KvecherL. LarsonC. MuralR.J. SomiariS. VichaA. ZelinkaT. BennettJ. IacoccaM. RabenoB. SwansonP. LatourM. LacombeL. TêtuB. BergeronA. McGrawM. StaugaitisS.M. ChabotJ. HibshooshH. SepulvedaA. SuT. WangT. PotapovaO. VoroninaO. DesjardinsL. MarianiO. Roman-RomanS. SastreX. SternM-H. ChengF. SignorettiS. BerchuckA. BignerD. LippE. MarksJ. McCallS. McLendonR. SecordA. SharpA. BeheraM. BratD.J. ChenA. DelmanK. ForceS. KhuriF. MaglioccaK. MaithelS. OlsonJ.J. OwonikokoT. PickensA. RamalingamS. ShinD.M. SicaG. Van MeirE.G. ZhangH. EijckenboomW. GillisA. KorpershoekE. LooijengaL. OosterhuisW. StoopH. van KesselK.E. ZwarthoffE.C. CalatozzoloC. CuppiniL. CuzzubboS. DiMecoF. FinocchiaroG. MatteiL. PerinA. PolloB. ChenC. HouckJ. LohavanichbutrP. HartmannA. StoehrC. StoehrR. TaubertH. WachS. WullichB. KyclerW. MurawaD. WiznerowiczM. ChungK. EdenfieldW.J. MartinJ. BaudinE. BubleyG. BuenoR. De RienzoA. RichardsW.G. KalkanisS. MikkelsenT. NoushmehrH. ScarpaceL. GirardN. AymerichM. CampoE. GinéE. GuillermoA.L. Van BangN. HanhP.T. PhuB.D. TangY. ColmanH. EvasonK. DottinoP.R. MartignettiJ.A. GabraH. JuhlH. AkeredoluT. StepaS. HoonD. AhnK. KangK.J. BeuschleinF. BreggiaA. BirrerM. BellD. BoradM. BryceA.H. CastleE. ChandanV. ChevilleJ. CoplandJ.A. FarnellM. FlotteT. GiamaN. HoT. KendrickM. KocherJ-P. KoppK. MoserC. NagorneyD. O’BrienD. O’NeillB.P. PatelT. PetersenG. QueF. RiveraM. RobertsL. SmallridgeR. SmyrkT. StantonM. ThompsonR.H. TorbensonM. YangJ.D. ZhangL. BrimoF. AjaniJ.A. GonzalezA.M.A. BehrensC. BondarukJ. BroaddusR. CzerniakB. EsmaeliB. FujimotoJ. GershenwaldJ. GuoC. LazarA.J. LogothetisC. Meric-BernstamF. MoranC. RamondettaL. RiceD. SoodA. TamboliP. ThompsonT. TroncosoP. TsaoA. WistubaI. CarterC. HayduL. HerseyP. JakrotV. KakavandH. KeffordR. LeeK. LongG. MannG. QuinnM. SawR. ScolyerR. ShannonK. SpillaneA. StretchJ. SynottM. ThompsonJ. WilmottJ. Al-AhmadieH. ChanT.A. GhosseinR. GopalanA. LevineD.A. ReuterV. SingerS. SinghB. TienN.V. BroudyT. MirsaidiC. NairP. DrwiegaP. MillerJ. SmithJ. ZarenH. ParkJ-W. HungN.P. KebebewE. LinehanW.M. MetwalliA.R. PacakK. PintoP.A. SchiffmanM. SchmidtL.S. VockeC.D. WentzensenN. WorrellR. YangH. MoncrieffM. GoparajuC. MelamedJ. PassH. BotnariucN. CaramanI. CernatM. ChemencedjiI. ClipcaA. DorucS. GorincioiG. MuraS. PirtacM. StanculI. TcaciucD. AlbertM. AlexopoulouI. ArnaoutA. BartlettJ. EngelJ. GilbertS. ParfittJ. SekhonH. ThomasG. RasslD.M. RintoulR.C. BifulcoC. TamakawaR. UrbaW. HaywardN. TimmersH. AntenucciA. FaccioloF. GraziG. MarinoM. MerolaR. de KrijgerR. Gimenez-RoqueploA-P. PichéA. ChevalierS. McKercherG. BirsoyK. BarnettG. BrewerC. FarverC. NaskaT. PennellN.A. RaymondD. SchileroC. SmolenskiK. WilliamsF. MorrisonC. BorgiaJ.A. LiptayM.J. PoolM. SederC.W. JunkerK. OmbergL. DinkinM. ManikhasG. AlvaroD. BragazziM.C. CardinaleV. CarpinoG. GaudioE. CheslaD. CottinghamS. DubinaM. MoiseenkoF. DhanasekaranR. BeckerK-F. JanssenK-P. Slotta-HuspeninaJ. Abdel-RahmanM.H. AzizD. BellS. CebullaC.M. DavisA. DuellR. ElderJ.B. HiltyJ. KumarB. LangJ. LehmanN.L. MandtR. NguyenP. PilarskiR. RaiK. SchoenfieldL. SenecalK. WakelyP. HansenP. LechanR. PowersJ. TischlerA. GrizzleW.E. SextonK.C. KastlA. HendersonJ. PortenS. WaldmannJ. FassnachtM. AsaS.L. SchadendorfD. CouceM. GraefenM. HulandH. SauterG. SchlommT. SimonR. TennstedtP. OlabodeO. NelsonM. BatheO. CarrollP.R. ChanJ.M. DisaiaP. GlennP. KelleyR.K. LandenC.N. PhillipsJ. PradosM. SimkoJ. Smith-McCuneK. VandenBergS. RogginK. FehrenbachA. KendlerA. SifriS. SteeleR. JimenoA. CareyF. ForgieI. MannelliM. CarneyM. HernandezB. CamposB. Herold-MendeC. JungkC. UnterbergA. von DeimlingA. BosslerA. GalbraithJ. JacobusL. KnudsonM. KnutsonT. MaD. MilhemM. SigmundR. GodwinA.K. MadanR. RosenthalH.G. AdebamowoC. AdebamowoS.N. BoussioutasA. BeerD. GiordanoT. Mes-MassonA-M. SaadF. BocklageT. LandrumL. MannelR. MooreK. MoxleyK. PostierR. WalkerJ. ZunaR. FeldmanM. ValdiviesoF. DhirR. LuketichJ. PineroE.M.M. Quintero-AguiloM. CarlottiC.G.Jr Dos SantosJ.S. KempR. SankarankutyA. TirapelliD. CattoJ. AgnewK. SwisherE. CreaneyJ. RobinsonB. ShelleyC.S. GodwinE.M. KendallS. ShipmanC. BradfordC. CareyT. HaddadA. MoyerJ. PetersonL. PrinceM. RozekL. WolfG. BowmanR. FongK.M. YangI. KorstR. RathmellW.K. Fantacone-CampbellJ.L. HookeJ.A. KovatichA.J. ShriverC.D. DiPersioJ. DrakeB. GovindanR. HeathS. LeyT. Van TineB. WesterveltP. RubinM.A. LeeJ.I. AredesN.D. MariamidzeA. Cancer Genome Atlas Research Network Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation.Cell20181732338354.e1510.1016/j.cell.2018.03.03429625051
    [Google Scholar]
  37. YoshiharaK. ShahmoradgoliM. MartínezE. VegesnaR. KimH. Torres-GarciaW. TreviñoV. ShenH. LairdP.W. LevineD.A. CarterS.L. GetzG. Stemke-HaleK. MillsG.B. VerhaakR.G.W. Inferring tumour purity and stromal and immune cell admixture from expression data.Nat. Commun.201341261210.1038/ncomms361224113773
    [Google Scholar]
  38. AranD. HuZ. ButteA.J. xCell: Digitally portraying the tissue cellular heterogeneity landscape.Genome Biol.201718122010.1186/s13059‑017‑1349‑129141660
    [Google Scholar]
  39. WangM. De MarcoP. MerelloE. DrapeauP. CapraV. KibarZ. Role of the planar cell polarity gene Protein tyrosine kinase 7 in neural tube defects in humans.Birth Defects Res. A Clin. Mol. Teratol.2015103121021102710.1002/bdra.2342226368655
    [Google Scholar]
  40. LanderR. PetersenC.P. Wnt, Ptk7, and FGFRL expression gradients control trunk positional identity in planarian regeneration.eLife20165e1285010.7554/eLife.1285027074666
    [Google Scholar]
  41. ZhanL. RosenbergA. BergamiK.C. YuM. XuanZ. JaffeA.B. AllredC. MuthuswamyS.K. Deregulation of scribble promotes mammary tumorigenesis and reveals a role for cell polarity in carcinoma.Cell2008135586587810.1016/j.cell.2008.09.04519041750
    [Google Scholar]
  42. ZhangC. BruntL. OnoY. RogersS. ScholppS. Cytoneme-mediated transport of active Wnt5b-Ror2 complexes in zebrafish.Nature2024625799312613338123680
    [Google Scholar]
  43. WangD. NakayamaM. HongC.P. OshimaH. OshimaM. Gain-of-function p53 mutation acts as a genetic switch for TGF-β signaling-induced epithelial-to-mesenchymal transition in intestinal tumors.Cancer Res.20248415668
    [Google Scholar]
  44. ChessM.M. DouglasW. SaundersJ. EttensohnC.A. Genome-wide identification and spatiotemporal expression analysis of cadherin superfamily members in echinoderms.Evodevo20231411510.1186/s13227‑023‑00219‑738124068
    [Google Scholar]
  45. PattnaikB. NegiV. ChaudhuriR. DesirajuK. FaizanM.I. AkhtarA. AnsariM.S. ShakirM. GhewareA. PrakashY.S. GuleriaR. GhoshB. AgrawalA. AhmadT. MiR-326-mediated overexpression of NFIB offsets TGF-β induced epithelial to mesenchymal transition and reverses lung fibrosis.Cell. Mol. Life Sci.2023801235710.1007/s00018‑023‑05005‑137950757
    [Google Scholar]
  46. ChenZ.S. OuM. TaylorS. DafincaR. PengS.I. TalbotK. ChanH.Y.E. Mutant GGGGCC RNA prevents YY1 from binding to Fuzzy promoter which stimulates Wnt/β-catenin pathway in C9ALS/FTD.Nat. Commun.2023141842010.1038/s41467‑023‑44215‑w38110419
    [Google Scholar]
  47. LiL. ZhengJ. OlteanS. Regulation of epithelial-mesenchymal transitions by alternative splicing: Potential new area for cancer therapeutics.Genes20231411200110.3390/genes1411200138002944
    [Google Scholar]
  48. LiR.Q. YanL. ZhangL. ZhaoY. LianJ. CD74 as a prognostic and M1 macrophage infiltration marker in a comprehensive pan-cancer analysis.Sci. Rep.2024141812510.1038/s41598‑024‑58899‑738582956
    [Google Scholar]
  49. QiY. YaoQ. LiX. LiX. ZhangW. QuP. Cuproptosis-related gene SLC31A1: Prognosis values and potential biological functions in cancer.Sci. Rep.20231311779010.1038/s41598‑023‑44681‑837853210
    [Google Scholar]
  50. SamadiP. ShahnazariM. ShekariA. MaghoolF. JalaliA. A pan-cancer analysis indicates long noncoding RNA HAND2-AS1 as a potential prognostic, immunomodulatory and therapeutic biomarker in various cancers including colorectal adenocarcinoma.Cancer Cell Int.202323130710.1186/s12935‑023‑03163‑738042769
    [Google Scholar]
  51. ZhengC shan. Huang Wmei. Xia Hmei. Mi Jlin. Li Yqing. Oncogenic and immunological roles of RACGAP1 in pan-cancer and its potential value in nasopharyngeal carcinoma.Apoptosis2024291243266
    [Google Scholar]
  52. LiY. GaoW. YangZ. HuZ. LiJ. Multi-omics pan- cancer analyses identify MCM4 as a promising prognostic and diagnostic biomarker.Sci. Rep.2024141651710.1038/s41598‑024‑57299‑138499612
    [Google Scholar]
  53. DingN. LiM. ZhaoX. PHF5A is a potential diagnostic, prognostic, and immunological biomarker in pan- cancer.Sci. Rep.20231311752110.1038/s41598‑023‑44899‑637845358
    [Google Scholar]
  54. LuK.Q. LiZ.L. ZhangQ. YinQ. ZhangY.L. NiW.J. JiangL.Z. HeW. WangB. CDK12 is a potential biomarker for diagnosis, prognosis and immunomodulation in pan-cancer.Sci. Rep.2024141657410.1038/s41598‑024‑56831‑738503865
    [Google Scholar]
  55. LiuD. PengJ. XieJ. XieY. Comprehensive analysis of the function of helicobacter-associated ferroptosis gene YWHAE in gastric cancer through multi-omics integration, molecular docking, and machine learning.Apoptosis2023293-443945610.1007/s10495‑023‑01916‑338001345
    [Google Scholar]
  56. YuanY. FanY. TangW. SunH. SunJ. SuH. FanH. Identification of ALYREF in pan cancer as a novel cancer prognostic biomarker and potential regulatory mechanism in gastric cancer.Sci. Rep.2024141627010.1038/s41598‑024‑56895‑538491127
    [Google Scholar]
  57. WuH. GengQ. ShiW. QiuC. Comprehensive pan- cancer analysis reveals CCDC58 as a carcinogenic factor related to immune infiltration.Apoptosis2024293-453655510.1007/s10495‑023‑01919‑038066393
    [Google Scholar]
  58. WangS. ZhangM. SunH. LiT. HaoJ. FangM. DongJ. XuH. Multi-omics analysis of TLCD1 as a promising biomarker in pan-cancer.Front. Cell Dev. Biol.202411130590610.3389/fcell.2023.130590638559424
    [Google Scholar]
  59. GaoX. BuH. GaoX. WangY. WangL. ZhangZ. Pan-cancer analysis: SPAG5 is an immunological and prognostic biomarker for multiple cancers.FASEB J.20233710e2315910.1096/fj.202300626R37650687
    [Google Scholar]
  60. YuQ. XieT. ZhangY. PanT. TanY. QinH. YanS. Exploration of SERPINA family functions and prognostic value in breast cancer based on transcriptome and in vitro analysis.Environ. Toxicol.20243941951196710.1002/tox.2407938069587
    [Google Scholar]
  61. ZhuJ. ShiY. LanS. WangJ. JiangF. TangC. CaiY. PanZ. JianH. FangH. ZhangY. ZhongF. Dissection of pyroptosis-related prognostic signature and CASP6-mediated regulation in pancreatic adenocarcinoma: New sights to clinical decision-making.Apoptosis2023285-676978210.1007/s10495‑023‑01823‑736882663
    [Google Scholar]
  62. PuY. YangG. ZhouY. PanX. GuoT. ChaiX. The Macrophage migration inhibitory factor is a vital player in pan-cancer by functioning as a M0 macrophage biomarker.Int. Immunopharmacol.202413411219810.1016/j.intimp.2024.11219838733827
    [Google Scholar]
  63. LaiG. De GrossiF. CatusiI. PesceE. ManfriniN. Dissecting the puzzling roles of FAM46C: A multifaceted pan-cancer tumour suppressor with increasing clinical relevance.Cancers2024169170610.3390/cancers1609170638730656
    [Google Scholar]
  64. LiuS. WangZ. HuL. YeC. ZhangX. ZhuZ. LiJ. ShenQ. Pan-cancer analysis of super-enhancer-induced LINC00862 and validation as a SIRT1-promoting factor in cervical cancer and gastric cancer.Transl. Oncol.20244510198210.1016/j.tranon.2024.10198238718436
    [Google Scholar]
  65. XuS. XingJ. LiK. QiaoL. ZhangC. RenY. LiuY. Pan-cancer analysis of DCTN2 and its tumour-promoting role in HCC by modulating the AKT pathway.J. Cell. Mol. Med.20242811e1845010.1111/jcmm.1845038842133
    [Google Scholar]
  66. LiX. WangC. WangY. ChenX. LiZ. WangJ. LiuY. Integrated analysis of the role of PR/SET domain 14 in gastric cancer.BMC Cancer202424168510.1186/s12885‑024‑12424‑138840106
    [Google Scholar]
  67. YeJ. YingJ. ChenH. WuZ. HuangC. ZhangC. ChenZ. ChenH. PPIH acts as a potential predictive biomarker for patients with common solid tumors.BMC Cancer202424168110.1186/s12885‑024‑12446‑938834966
    [Google Scholar]
  68. LuoL. JiangM. WuH. LiuY. WangH. ZhouC. RenS. ChenX. JiangT. XuC. SIRPG expression positively associates with an inflamed tumor microenvironment and response to PD-1 blockade.Cancer Immunol. Immunother.202473814710.1007/s00262‑024‑03737‑y38833156
    [Google Scholar]
  69. WuZ. SuR. DaiY. WuX. WuH. WangX. WangZ. BaoJ. ChenJ. XiaE. Deep pan-cancer analysis and multi-omics evidence reveal that ALG3 inhibits CD8+ T cell infiltration by suppressing chemokine secretion and is associated with 5-fluorouracil sensitivity.Comput. Biol. Med.202417710866610.1016/j.compbiomed.2024.10866638820773
    [Google Scholar]
  70. LiM. GuoH. WangK. KangC. YinY. ZhangH. AVBAE-MODFR: A novel deep learning framework of embedding and feature selection on multi-omics data for pan-cancer classification.Comput. Biol. Med.202417710861410.1016/j.compbiomed.2024.10861438796884
    [Google Scholar]
  71. WangS. LiY. LinY. LiJ. GuoL. WangH. LinX. LiuZ. ZhangB. LiaoZ. ZhangZ. Bioinformatics analysis and experimental verification of the cancer-promoting effect of DHODH in clear cell renal cell carcinoma.Sci. Rep.20241411198510.1038/s41598‑024‑62738‑038796629
    [Google Scholar]
  72. LiK. YangH. LinA. XieJ. WangH. ZhouJ. CarrS.R. LiuZ. LiX. ZhangJ. ChengQ. SchrumpD.S. LuoP. WeiT. CPADS: a web tool for comprehensive pancancer analysis of drug sensitivity.Brief. Bioinform.2024253bbae23710.1093/bib/bbae23738770717
    [Google Scholar]
  73. KangJ. LeeJ.H. ChaH. AnJ. KwonJ. LeeS. KimS. BaykanM.Y. KimS.Y. AnD. KwonA.Y. AnH.J. LeeS.H. ChoiJ.K. ParkJ.E. Systematic dissection of tumor-normal single-cell ecosystems across a thousand tumors of 30 cancer types.Nat. Commun.2024151406710.1038/s41467‑024‑48310‑438744958
    [Google Scholar]
  74. ZhangC. WangY. GuoX. WangZ. XiaoJ. LiuZ. SLC7A5 correlated with malignancies and immunotherapy response in bladder cancer.Cancer Cell Int.202424118210.1186/s12935‑024‑03365‑738790003
    [Google Scholar]
  75. JungA.W. HolmP.C. GauravK. HjaltelinJ.X. PlacidoD. MortensenL.H. BirneyE. BrunakS. GerstungM. Multi-cancer risk stratification based on national health data: A retrospective modelling and validation study.Lancet Digit. Health202466e396e40610.1016/S2589‑7500(24)00062‑138789140
    [Google Scholar]
  76. LinJ. LiuP. SunK. JiangL. LiuY. HuangY. LiuJ. ShiM. ZhangJ. WangT. ShenB. Comprehensive analysis of KLF family reveals KLF6 as a promising prognostic and immune biomarker in pancreatic ductal adenocarcinoma.Cancer Cell Int.202424117710.1186/s12935‑024‑03369‑338773440
    [Google Scholar]
  77. ZhangZ. LiY. QuanZ. LiY. ZhuL. SunS. ChenX. Constructing immune and prognostic features associated with ADCP in hepatocellular carcinoma and pan-cancer based on scRNA-seq and bulk RNA-seq.Front. Immunol.202415139754110.3389/fimmu.2024.139754138774870
    [Google Scholar]
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  • Article Type:
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Keyword(s): immune infiltration; multi-omics; pan-cancer; prognosis; PTK7; tumor microenvironment
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