Protein and Peptide Letters - Volume 25, Issue 3, 2018

The most common recombinant antibody format is the single chain fragment variable (scFv) which it contains the complete antigen-binding domains of an intact antibody. ScFv fragments have found vast medical and non-medical applications. Several approaches have been employed to increase the affinity, avidity and structural stability related to these antibody fragments. Most approaches related to scFv improvement have been included in this review.

Background: Enhancing thermostability of the 7α-Hydroxysteroid dehydrogenases (7α-HSDHs) is beneficial to its industrial application broadly. For protein engineering to enhance thermostability the nonrational strategy, directed evolution, has been applied in obtaining more stable proteins through error-prone PCR or DNA rearrangement generating random mutations. However, the successful application of directed evolution needs to build a large mutant library. Site-directed mutations of CA 7α-HSDH had been performed to probe the relationship between the compactness increasing and thermostability enhancing. Although most of the mutations in β-sheet core predicted by MAESTRO became more stable than wild type, unfortunately, all the mutations suffered dramatic activity loss. Objective: The main objective of this study was to verify effects of the mutations in helices selected from the predicting results through MAESTRO on thermostability improving of CA 7α-HSDH. Methods: Seven mutants, S22L, P124L, A125L, N171L, A195Q, L197E and Y259E were synthesized and verified through DNA sequencing in Sangon Biotech (Sangon, Shanghai, China). The two mutants, A104P and G105P were prepared by over-lapping PCR. The GST-fusion expression vector, pGEX-6p-1 (GE Healthcare), was used for protein expression with restriction sites BamH I and Not I. Thermostability was measured by circular dichroism (CD) spectrometer (MOS-450, BioLogic Inc). All the enzymes were diluted in PBS (pH 7.3, 10 mM) to OD222 value between 0.8 and 1, and temperature varied from 20°C to 95°C. Activity of enzyme was assayed by measuring the production of NADPH by UV-visible spectrophotometer at 340 nm. The activity assay was performed in 2 mL reaction mixture which contained PBS (pH 7.3, 10 mM), NADP+ (0.5 mM) and taurocholic acid (TCA) at 25°C. Results: Based on unfolding free energy changes (ΔΔG) prediction seven mutations of Clostridium absonum (CA) 7α-HSDH were selected and experimentally verified, and these mutants fitted three-state denaturation model well, among which S22L located in the αA possessed the greatest Tm N→I increase (> 8°C). Mutants P124L, L197E, N171L and Y259E also became more stable than wild type CA 7α-HSDH with different ranges. Meanwhile, thermostability of the two mutants, A104P and G105P (in the coil between βD and αD) resulting from the proline substitution method decreased significantly. Enzyme activity assays indicated that mutant L197E located in αF maximally maintained 28.7% of catalytic efficiency, and activity of the five mutants, P124L, A125L, N171L, A104P and G105P cannot be detected. Conclusion: Although all the mutants' activities decreased, the mutant L197E with the maximum activity retain suggested that the loop structure (residues 194 to 211) may be the favored candidate sites to enhance thermostability. In addition, CA 7α-HSDH may suffer structural destruction resulting from the proline substitution in A104 and G105.

Background: Adenylate cyclase (CyaA) is one of the major virulence factors of Bordetella pertussis that plays a key role in whooping cough pathogenesis. A putative transmembrane helical hairpin (α2-loop-α3), encompassing residues 529-594 of CyaA hemolysin (CyaA-Hly) domain, was previously proposed to be crucially involved in hemolytic activity against target erythrocytes. Objective: The main objective of this study was to gain more insight into membrane permeabilization of this toxin. Membrane-permeabilizing abilities of the purified 130-kDa CyaA-Hly and synthetic peptides corresponding to the helical component of interest, were evaluated. Methods: Synthetic peptides corresponding to the critical helical component, i.e. α2 (W528-G550), α3 (G568-R594) and α2-loop-α3 (W528-R594), were examined on various membrane models in comparison with the purified 130-kDa CyaA-Hly. The peptides were commercially synthesized and the purified toxin was obtained from recombinant plasmid construction and expression in Escherichia coli, followed by purification via immobilized-metal affinity chromatography. Membrane permeabilization or hemolysis of the peptides or the purified toxin were determined by liposomal leakage, hemolysis assays and atomic force microscopy (AFM) imaging. Results: Our results showed that the truncated 130-kDa CyaA-Hly, the synthetic peptides α2, α3 and the α2-loop-α3 hairpin exhibited distinct membrane-permeabilizing capacities in different membrane models. We demonstrated that the CyaA-Hly toxin and the peptides, especially the α2 peptide, caused nonspecific liposomal leakage as monitored by fluorescence dequenching of sulforhodamine B-loaded lipid vesicles. Notably, α2 peptide showed a predominant effect of membrane permeabilization when compared to α2-loop-α3 hairpin and α3 peptides. In addition, AFM imaging demonstrates lipid membrane disruption induced by the CyaA-Hly toxin or the peptidic α2-loop-α3 hairpin. Conclusion: Overall, the study provides the supporting evidence that the putative helical α2-loop-α3 hairpin could interact with the lipid membranes while the helical α2 peptide strongly induced liposomal leakage and hemolysis, as compared with the helical α3 or the α2-loop-α3 peptides, suggesting that the helix 2 from the hydrophobic region of CyaA-Hly is a crucial component that contributes to membrane permeabilization.

Background: Immunotherapies targeting the human papillomavirus (HPV) oncogenic proteins, E6 and E7, are effective to treat HPV-associated cervical malignancies. Objective: The main objective of this study was to generate the fluorescent HPV16 E7 protein for detection of delivery in vitro. Methods: Two types of the fusion E7-GFP proteins (i.e., with or without linker) were expressed in different E. coli strains. Then, the efficiency of GFP and E7-GFP transfection was compared with FITC-antibody protein control using TurboFect reagent in the HEK-293T cell line. Results: Our data indicated that both E7-GFP fusion proteins were efficiently produced in M15 E. coli strain, but not in BL21 or Rosetta strains. The E7-GFP fusion showed a clear band of ~ 50 kDa in SDS-PAGE. Moreover, the E7-GFP protein maintained the fluorescent properties only when there was a distance between E7 and GFP genes, suggesting a promising potential to use GFP fusion protein in generating soluble form of protein. This fluorescent property was stable and could be detected in vitro. Moreover, the HEK-293T cells transfected by GFP/TurboFect and E7- GFP/TurboFect complexes demonstrated spreading green regions using fluorescent microscopy. Flow cytometry results showed that the GFP fluorescence was stable even at 24 h post-transfection. Conclusion: Briefly, the E7-GFP fusion protein with linker can be useful for the development of protein vaccines against HPV16 infections and detection in vivo.

Background: Vernalization is one of the pivotal ways for plants to flower. The twodimensional gel electrophoresis (2-DE) and matrix-assisted laser desorption/ionization time-offlight/ time-of-flight mass spectrometry (MALDI-TOF/TOF MS) were applied to analyze the changes in protein expression profiles in responding to vernalization in leaves of wheat seedling before (0d) and after (30d) of vernalization. Objective: The main objective of this study was to analyze the vernalization-responsive proteins in winter wheat after vernalization. Methods: Winter wheat seedling leaf proteins were extracted by phenol extraction coupled with ammonium acetate in methanol. 2-DE was conducted according to procedures described in the manual given by the GE manufacture. The selected protein spots were identified by MALDITOF/ TOF MS. Gene ontology (GO) classification was applied to classify the functions of the differentially expressed proteins. Pathway enrichment analysis identified significantly enriched metabolic pathways or signal transduction pathways relative to the whole proteins background. Results: The results of 2-DE and MALDI-TOF/TOF MS showed that among the 65 differentially expressed proteins that were successfully identified under vernalization, 30 were up-regulated whereas 35 were down-regulated after vernalization, respectively. These vernalization-responsive proteins were found to play roles in carbohydrate metabolism, protein metabolism, photosynthesis, defense and stress-resistance and may therefore participate in many biological processes in responding to vernalization. The enhanced accumulation of proteins after vernalization, such as thiamine thiazole synthase, late embryogenesis abundant protein, and glutathione-S-transferase, probably play vital roles in the mechanisms underlying vernalization response in wheat. Conclusion: Our results indicated these vernalization-responsive proteins were found to be involved in protein metabolism, carbohydrate metabolism, photosynthesis, and stress resistance/ defense. The responses of plants to low temperature were very complex, involving in a wide range of cellular pathways for signal transduction, gene regulation, protein modifications, and metabolic regulation. Studying on wheat proteomic profiles in response to vernalization can improve our understanding the molecular mechanisms underlying vernalization in cereals. The results obtained in this study have provided a novel insight into the mechanisms underlying vernalization in cereal crops.

Background: αA- and αB- crystallin are members of small heat shock protein family with chaperone property. Their interactions with Cu2+ ions are reported in neurodegenerative diseases. We have been studying the effect of small ionic molecules on the stability of α-crystallin. Cu2+ is co-ordinated with αB-crystallin involving three histidine residues and one aspartic acid residue as potential binding sites. However, copper binding sites for the oligomeric native protein αA-crystallin protein is not known. Objective: The objective of this study was to study oligomerization and stability of αA- and αBcrystallin in presence and absence of Cu2+ ions and to find binding sites of Cu2+ on αA-crystallin. Methods: The recombinant Human αA- and αB-crystallin proteins were purified after overexpression from the E. coli BL21DE3 cell lysate by a combination of ion-exchange and gel filtration chromatography. Mass analysis of αA- and αB-crystallin in absence and presence of Cu2+ were carried out by MALDI TOF MS. Stability of αA-crystallin in presence and absence of Cu2+ was determined by equilibrium urea denaturation experiments. The equilibrium urea unfolding profiles of the αA-crystallin in absence and presence of different Cu2+ concentrations were fitted according to the three state model of protein unfolding. Dynamic Light Scattering (DLS) measurements were carried out to detect the oligomeric size of αA-crystallin in presence and absence of Cu2+ during urea unfolding. Histidine residues were modified by DEPC (Diethyl pyro carbonate). Chemically modified and unmodified αA-crystallin was digested by trypsin prior to MALDI MS analysis. Cu2+ pre-incubation was done before the chemical modification. Results: Mass spectrometric detection of intact protein allows direct measurement of Cu2+ ions bound to the protein. Thus the average numbers of Cu2+ bound to αA- and αB-crystallin were 4.2 and 3.6 respectively per subunit. It is seen that in presence of Cu2+ ions the free energy (ΔG) of unfolding of αA-crystallin almost doubled. The size analysis by dynamic light scattering data clearly indicated that in presence of Cu2+ ions the oligomeric size remain unchanged with increasing urea solutions. Mass spectrometric detection with chemical modification of histidine residues of αA-crystallin in presence and absence of Cu2+ indicated that amino acid residues H107, H100, H115 of αA-crystallin are involved in Cu2+ binding. Conclusion: Our results indicated that Cu2+ helped in increasing stability of αA-crystallin and three histidine residues H100, H107 and H115 of αA-crystallin are Cu2+ binding residues.

Background: Moringa oleifera is used in traditional medicine as well as in food, cosmetic, and pharmaceutical industries. Water-soluble M. oleifera lectin (WSMoL) is an anionic protein isolated from the seeds of this tree. Until now, immune responses promoted by this lectin in human PBMC have not been investigated. Objective: The main objective of this study was to investigate the immunomodulatory effects of WSMoL on human PBMC through measurement of lymphocytes subsets, cytokine and nitric oxide levels. Methods: Human peripheral blood mononuclear cells (PBMC) were isolated through Ficoll technique, were incubated with WSMoL (10 μg/mL) for 24, 48 and 72 hours, and was performed immunophenotyping assay of lymphocytes and monocytes. Culture supernatants were used to determined cytokine and nitric oxide levels. Assays with cells subsets and cytokine production were performed through cytometry. Nitric oxide release assay was determinate by spectrophotometry. Results: WSMoL induced the release of the cytokines TNF-α, IL-2, IL-6, IL-10 as well as nitric oxide. Incubation of PBMC with this lectin also led to activation of CD8+ T lymphocytes. Conclusion: WSMoL promotes immunomodulation in human PBMC inducing a potential wound healing profile and, in future in vivo assays, can be evaluated as adjuvant in immunosuppressive diseases and wound repair.

Background: Champedak galactose-binding (CGB) lectin is a tetrameric protein with noncovalently bound monomers, isolated from Artocarpus integer fruit seeds. We had previously reported existence of a structured monomer and an unfolded monomer of CGB lectin at pH 2.5 and pH 1.5, respectively. Polyols are known to induce significant refolding in denatured proteins and stabilize proteins against environmental stresses. Studies on the effect of various polyols on the acid-denatured states of CGB lectin are lacking. Objective: The objective of this study was to investigate the effects of four different polyols, namely, ethylene glycol, erythritol, xylitol and sorbitol on the acid-denatured states of CGB lectin. Methods: CGB lectin was subjected to acid denaturation at pH 2.5 and pH 1.5, both in the absence and presence of 30% (w/v) polyols, i.e. ethylene glycol, erythritol, xylitol and sorbitol. Thermal denaturation of the acid-denatured states was also studied in the absence and presence of these polyols. Different spectroscopic probes such as tryptophan fluorescence, ANS fluorescence and far-UV CD spectral signal were used to monitor structural changes in the acid-denatured states of CGB lectin in the presence of polyols. Results: Presence of erythritol, xylitol and sorbitol in the incubation mixture was found to stabilize the lectin at both pH 2.5 and pH 1.5, as evident from the burial of the hydrophobic clusters and decreased polarity around Trp residues. These polyols also stabilized the acid-denatured states of CGB lectin against thermal denaturation by shifting the thermal transition curves towards higher temperatures. Exposure of the acid-denatured states of CGB lectin, obtained at pH 2.5 and pH 1.5 to 61°C and 51°C, respectively, induced formation of non-native β-structures, compared to that present at 25°C, and this phenomenon was significantly suppressed in the presence of these polyols. Based on the spectral data, both sorbitol and erythritol appeared to exude better stabilizing effect. On the other hand, ethylene glycol was shown to destabilize the aciddenatured states of CGB lectin. Conclusion: Thermal stabilization of the lectin was noticed in the presence of erythritol, xylitol and sorbitol at both pH 2.5 and pH 1.5. These polyols also stabilize the secondary and tertiary structures of the acid-denatured CGB lectin at 25°C. Ethylene glycol was proved to be a destabilizer of the acid-denatured CGB lectin.